PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05926.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 301aa    MW: 33217.9 Da    PI: 6.6836
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05926.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-0928602254
                             SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                              +yp+ +++  LAk++gLt +qV++WF N R +
  Rsa1.0_05926.1_g00001.1 28 RQYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 60
                             68*****************************88 PP
2BELL42.71.5e-141303261
                     BELL 32 tvissFeavaglgsakpYtslAlkaiSrhF 61
                             +vissFe++ag+gsak+YtslAlk+iSr++
  Rsa1.0_05926.1_g00001.1  1 MVISSFEQAAGIGSAKSYTSLALKTISRQY 30
                             79***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.3E-8130IPR006563POX domain
SMARTSM003893.4E-41468IPR001356Homeobox domain
PfamPF059201.8E-132560IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.607.7E-192670IPR009057Homeodomain-like
SuperFamilySSF466892.14E-122871IPR009057Homeodomain-like
PROSITE profilePS5007110.772964IPR001356Homeobox domain
CDDcd000863.46E-102965No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVISSFEQAA GIGSAKSYTS LALKTISRQY PKDSDKHMLA KQTGLTRSQV SNWFINARVR  60
LWKPMVEEMY AEEMKEQGKN MGSMEKTPNL DENIDDYASK STSNQEKIPM GGGGADNYHL  120
NPSHNDDLER VTGMQGSPKR LRTSNEEMMQ PINAGFSSNE KHTMKILEER QGIRADGGYP  180
FMGSFGQYQM DEMSRFNVAV SDQELLAQRF SGNNNGVSLT LGLPHCDSLS STHHQGFMQN  240
HHGIQIGRSV KIGETEEYGN SAINGGSGST ATTHSSAAAY NGMNIQNQKR YVAQLLPDFV  300
A
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05926.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476369.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-145BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0D3B5561e-174A0A0D3B556_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AJ121e-174A0A3P6AJ12_BRAOL; Uncharacterized protein
STRINGBo3g029830.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2179422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-145BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]