PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05509.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 279aa    MW: 31848.3 Da    PI: 6.3597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05509.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.62.9e-121256750
                             HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
                   SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                              ++ + f  R +++lKKA+ELS LC+++ +vi +  +g+l  +++
  Rsa1.0_05509.1_g00003.1 12 VKKDTFFKARAKTVLKKAYELSQLCGVNLCVICYDCEGNLvNTWP 56
                             566777888*************************88887625776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.004157IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.054451IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-121194IPR002100Transcription factor, MADS-box
PfamPF003191.9E-91351IPR002100Transcription factor, MADS-box
CDDcd002665.71E-151384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTRKICRSKL SVKKDTFFKA RAKTVLKKAY ELSQLCGVNL CVICYDCEGN LVNTWPENDE  60
AQVKATAERF SRLSEKERNK KSTNLSRFLN KKMMDEKKAS LKANDDKFSK KVFVFEDSLQ  120
SRLGLFQEKI SELVDDDHGV VVSKDLASDD PSLINVDQYQ PILMNHLRTT ESPADLPTTL  180
LDHPSNFSIL LFNHDNGTFT QLANSSALPP SFEQPMIPFN QDYGTNYLDL LLGEQDMRSC  240
YNFDLPIPPP MMHTQTSMFQ GIPYNQMQFS SGYPTMMFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05509.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443452.10.0PREDICTED: agamous-like MADS-box protein AGL53
RefseqXP_018443454.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A397YPC59e-73A0A397YPC5_BRACM; Uncharacterized protein
STRINGBra004071.1-P3e-72(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.16e-42AGAMOUS-like 53