PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05374.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19521.8 Da    PI: 6.3134
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05374.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.45e-103411250
                             HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             tfskR++ ilKK +E+ +L ++e++ ++f + gk + ++
  Rsa1.0_05374.1_g00001.1  3 TFSKRKARILKKMNEITTLFNVEASFLVFPEAGKHHSFA 41
                             9*********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.568144IPR002100Transcription factor, MADS-box
PfamPF003191.3E-10140IPR002100Transcription factor, MADS-box
SMARTSM004320.0031143IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-12260IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MATFSKRKAR ILKKMNEITT LFNVEASFLV FPEAGKHHSF AHPSMEDAFG RVKRSLGHEP  60
SGKDDTNIGS LMEDYKKQHN EEINKKWYDL AEELMMAEEK EKELQESKSE WSNIVNEGVS  120
VDELKRAHQA FVELNKRVSA KALQWSGKDG DGSSSALGEH GHCNGGEARA GEQT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05374.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013704711.14e-73agamous-like MADS-box protein AGL23
TrEMBLA0A3P6DMJ59e-72A0A3P6DMJ5_BRAOL; Uncharacterized protein
STRINGBra037759.1-P4e-68(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-23AGAMOUS-like 57