PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05336.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 625aa    MW: 69946.6 Da    PI: 9.3677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05336.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.9e-07213233425
                              ---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                              ++Cr+fa  G C+ G +C+F+H
  Rsa1.0_05336.1_g00003.1 213 VPCRYFAL-GNCRNGTSCRFSH 233
                              69**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.742209236IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017210235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5212234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4214234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MSVSGRKRVS KWDSKEEDLS GNDYPEQRQQ HARFYPEGKG RNGSSKRSAP DVDDDEHLKS  60
KQQHPGVAWP PRSSRGGDAA AMMGYYDSRK SSSEQDESRD RPRARRSGSR SNSRSRSPVQ  120
RVRRDAGGGS YDSRHKTRSG REVDGRYNRA GGDHDREPKN RKTRDTSYYK EEDSREQYPL  180
RVGGRSEDNN NNSRRETQRR DVSEREYNRI SNVPCRYFAL GNCRNGTSCR FSHHGARRSP  240
ERNPQDEMFG RHENNHRWNE RSDTGKSSEG AKGNNSNWID DMEMSPDWNY GVKTLKKPLN  300
GEKDSLAPSY EHGSAEVISQ QVGDRRSIGM FPSVGEKTVA SSHHGFSNNS APPIQAFSQV  360
QSALPYQNTP IAAGASQVLP PPPAAATHLP ENGNAVSREE LNHISNISAS LAQFFGNGQP  420
IPNLHSTLNP IQSMQLPQVY GQKEQSSHTQ TDILSIHTGV VPAVTALQIN NSDSLVSLAE  480
NPKPSSEENR DKRREEEAGK EPDGRKPGKE EETEKVVEEE EEEEDEDDGV GGENKKKEKD  540
PKGMRAFKFS LVEIVKELLK PAWKEGGMNK DAYKNIVKKV VDKVTGAIQT GNIPQTQEKI  600
DHYLSASKPK LTKLVQAYIS KVKKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05336.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324903e-60AC232490.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049A09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490934.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
RefseqXP_018490936.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
TrEMBLD7KD690.0D7KD69_ARALL; Predicted protein
STRINGAl_scaffold_0001_41870.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-17C3H family protein