PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04805.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 130aa MW: 14793.5 Da PI: 6.3332 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.9 | 8.5e-14 | 23 | 102 | 11 | 97 |
HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + ++ l +p f+ +h g ++ kt +l++ es ++W vk+ ++ + +t+GW++F+ ++ + gD+++F+++g++ f + Rsa1.0_04805.1_g00001.1 23 FHTH-LNIPVAFFLKHvqG-SNDHIKTAKLRTdESEKTWLVKI--NGLR----FTDGWQDFAVTHEFRIGDIIIFRHEGEMVF--H 98 4445.99**********63.4444467888776999*******..5555....9**********************9998888..8 PP EEEE CS B3 94 vkvf 97 v++f Rsa1.0_04805.1_g00001.1 99 VTAF 102 8777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-22 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-20 | 9 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.771 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.99E-15 | 13 | 102 | No hit | No description |
SMART | SM01019 | 4.8E-20 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-8 | 26 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MAIDKSLHSP NNPHFFQPLL PGFHTHLNIP VAFFLKHVQG SNDHIKTAKL RTDESEKTWL 60 VKINGLRFTD GWQDFAVTHE FRIGDIIIFR HEGEMVFHVT AFGPSCCDIQ YTSASSHNIS 120 DDSDDQTNNT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04805.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018462801.1 | 4e-83 | PREDICTED: B3 domain-containing protein REM17-like | ||||
Swissprot | Q84WP3 | 2e-53 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A397XYM3 | 2e-76 | A0A397XYM3_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bra024697.1-P | 2e-76 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 8e-56 | B3 family protein |
Publications ? help Back to Top | |||
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