PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04790.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 27273.2 Da PI: 5.6544 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.4e-05 | 144 | 183 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Rsa1.0_04790.1_g00002.1 144 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 183 67788999*********999.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.89 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-11 | 139 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.89E-4 | 142 | 187 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-7 | 143 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGDTSEDQDD RSFSELLMLS DGPPSSSDHH LINAGADGGE DSFGFVFSDP NGSRMLCFSG 60 ESQNDDKSLF LQPSLPSGVS VSGPSCTTNI CQNSNDACAE NQSTKSSTKK RNGSVNGETM 120 DHNRKPSKKC KQNQEKTSVG TAKVRKERLG ERIAALQQLV SPYGKTDAAS VLHEAMGYIK 180 FLQDQIQVLC SPYLINYSLD GGVVTGDVRA GKKVTDLRSR GLCLAPVSST VLVESSNGAD 240 FWSPATMGHT TSFTQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04790.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437822.1 | 0.0 | PREDICTED: transcription factor bHLH113-like | ||||
Swissprot | Q9LT67 | 1e-133 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | A0A398AR96 | 1e-162 | A0A398AR96_BRACM; Uncharacterized protein | ||||
STRING | Bra038211.1-P | 1e-162 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7402 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-128 | bHLH family protein |
Publications ? help Back to Top | |||
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