PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04785.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 397aa    MW: 44584.9 Da    PI: 9.2218
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04785.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.7e-1278134359
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                              e kr  r+ +NRe+A  sRqRKk ++eeLe+kvk+L++  ++L  +++    e  +l
  Rsa1.0_04785.1_g00001.1  78 EEKRKARLVRNRESALLSRQRKKHYVEELEDKVKSLQSVITDLNTKVSYFMSENVTL 134
                              5699*********************************99999988887776666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-1276140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.03678136IPR004827Basic-leucine zipper domain
PfamPF001703.0E-1178137IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-1580138No hitNo description
SuperFamilySSF579592.65E-1280137No hitNo description
CDDcd147044.76E-1981131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAVDSFYGSS FDLRNSISDL GVDFELTFDD LWSPSENESF FVSVDKTSIA TKRKKEIEEE  60
DRWMSSNKYR RIDEDGDEEK RKARLVRNRE SALLSRQRKK HYVEELEDKV KSLQSVITDL  120
NTKVSYFMSE NVTLRQTVGP AGKGMCWPPF VPVTYPPWMM PFPAYQVVPL LPIPRLKPQR  180
SVAKVKKSEA KTKKVASVSV LGLVFCLFLF GALVPFVVRG RVLDVSVNSS SSSRGYDSEL  240
LVASLFVPRN EKLVKLDGNL IIHPVSTSKE DKLNSTAANG EMKQWFSEGV AGPMFSSEMC  300
TEVFQFDVSS TSGSIRPASQ QPKNNRRNLT KDQNSTNKEN FSRTKPFSST VVTMLTDPRE  360
EGGDGGTQSL SRVFIVVLVD GMKYVTYSCV LPHLVTT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04785.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198513e-37AJ419851.1 Arabidopsis thaliana partial mRNA for AtbZIP transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459889.10.0PREDICTED: bZIP transcription factor 17-like
SwissprotQ9LXX42e-95BZP49_ARATH; bZIP transcription factor 49
TrEMBLA0A3N6Q9N31e-169A0A3N6Q9N3_BRACR; Uncharacterized protein
STRINGBo4g112860.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2027756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.14e-47basic region/leucine zipper motif protein 49
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]