PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04574.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 389aa    MW: 43502.1 Da    PI: 7.0641
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04574.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15.1e-30158215260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++++ei+Y+g Hnh+k
  Rsa1.0_04574.1_g00002.1 158 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQITEIIYKGGHNHPK 215
                              8***************************************9.***************85 PP
2WRKY103.11.6e-32324381259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+versaed+++v +tYeg+Hnh+
  Rsa1.0_04574.1_g00002.1 324 VDGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVRKQVERSAEDERAVLTTYEGRHNHD 381
                              5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-25145216IPR003657WRKY domain
SuperFamilySSF1182904.45E-23154216IPR003657WRKY domain
SMARTSM007741.3E-30157215IPR003657WRKY domain
PfamPF031061.7E-22158214IPR003657WRKY domain
PROSITE profilePS5081120.461158216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-34308383IPR003657WRKY domain
SuperFamilySSF1182902.22E-28315383IPR003657WRKY domain
PROSITE profilePS5081134.107318383IPR003657WRKY domain
SMARTSM007743.5E-37323382IPR003657WRKY domain
PfamPF031061.7E-25325381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSSTSFTDLL ASTGVDFHKE DEDFLGGFYP EITGSGLPKF KTAQPPPLPI SQSFAFSDLP  60
DSPLLLSSSH SLISPTTGAF PFQGFNGINN HSDIPWQLQS QTQTQTQTSN ASSALQETYV  120
VQDLPKKKDP VSREFSAHSL GSDRQVKVPS YMVSRNSNDG YGWRKYGQKQ VKKSENPRSY  180
FKCTYPNCVS KKIVETASDG QITEIIYKGG HNHPKPEFTK RPSGSISISS SSSLANARRM  240
FNPSSVVSET HDHSENSSIS FDYSDLEQKG FKSEYGEIDE EDEQPEIKRM KREGEDEGMS  300
VEVSRGVKEP KVVVQTISDI DVLVDGFRWR KYGQKVVKGN TNPRSYYKCT YQGCGVRKQV  360
ERSAEDERAV LTTYEGRHNH DIPTALRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32158383877Probable WRKY transcription factor 4
2lex_A2e-32158383877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00282DAPTransfer from AT2G30250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04574.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529340.0AK352934.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473508.10.0PREDICTED: probable WRKY transcription factor 25 isoform X1
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A078GFW60.0A0A078GFW6_BRANA; BnaC03g16740D protein
TrEMBLA0A0D3B4660.0A0A0D3B466_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AWN40.0A0A3P6AWN4_BRAOL; Uncharacterized protein
STRINGBo3g024450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]