PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04569.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 198aa MW: 22981.7 Da PI: 4.3895 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.4 | 9.4e-22 | 6 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lp+GfrF+Ptd e+ +++L++k+ +++++ v ke+ di++ +P+dLp + +e++wyf++++ ++ t +n +++Wk+ Rsa1.0_04569.1_g00003.1 6 LPVGFRFRPTDCEISKYFLTRKALEQPMRSPIVPKEChDIFSRHPRDLPG--YPRETHWYFYCRKLDSQVT---PNS---HSIWKQ 83 79**************************9988899999***********4..34789******99886643...444...578*** PP NAM 86 tgkdkevlsk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128 g+++ vl++ ++lvg+k++++f ++ ++ + +W+m+e++l Rsa1.0_04569.1_g00003.1 84 IGEETGVLDTknYDALVGIKRVFTFVdheeepndilLSDEDEPPQYNWFMDEFSL 138 ********98545566**********766655554436777888*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-27 | 5 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.193 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-15 | 7 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEPKALPVGF RFRPTDCEIS KYFLTRKALE QPMRSPIVPK ECHDIFSRHP RDLPGYPRET 60 HWYFYCRKLD SQVTPNSHSI WKQIGEETGV LDTKNYDALV GIKRVFTFVD HEEEPNDILL 120 SDEDEPPQYN WFMDEFSLPL TISETDWVLC HVFRKNIEPG SESEEEGENE EKETVEAESL 180 DLLLAKDGNV LPPSPSPP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04569.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232543 | 1e-166 | AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444528.1 | 1e-126 | PREDICTED: NAC domain-containing protein 104-like | ||||
TrEMBL | A0A078FEP1 | 1e-110 | A0A078FEP1_BRANA; BnaC06g13440D protein | ||||
TrEMBL | A0A0D3CT73 | 1e-110 | A0A0D3CT73_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g064960.1 | 1e-111 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 1e-78 | NAC family protein |