PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04545.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 175aa MW: 20358.4 Da PI: 9.4895 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 55.1 | 2.1e-17 | 43 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHH.HTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLn.mYgFkkvkdeekkskskekiweFkhksF 86 F lyei++d+++++++sws++g+sf+ +++++f +++L + + f F+ L +Y F+kv+++e+ e++h++F Rsa1.0_04545.1_g00005.1 43 FADVLYEIVDDPKTDSIVSWSQDGKSFIFWNQDKFCSDILLPKYGLTTFPTFIGRLSvTYRFRKVEESEH--------CEYAHDYF 120 77889************************************************999846*******9995........6******* PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkks 102 +gk el +i+r+ + Rsa1.0_04545.1_g00005.1 121 VRGKPELTVEIERQFK 136 ************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.5E-20 | 39 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.9E-17 | 43 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.9E-20 | 43 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.42E-17 | 43 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MAGKINAREL SSPEGIPMAG RVKEYYRYPA LEASRKGLVR RYFADVLYEI VDDPKTDSIV 60 SWSQDGKSFI FWNQDKFCSD ILLPKYGLTT FPTFIGRLSV TYRFRKVEES EHCEYAHDYF 120 VRGKPELTVE IERQFKERCA PIKNIKPPEP GSREIRERRM ALILAQKAAR NLSIL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04545.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436689.1 | 1e-125 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A398ANR8 | 2e-88 | A0A398ANR8_BRACM; Uncharacterized protein | ||||
STRING | Bra029226.1-P | 2e-87 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51910.1 | 2e-17 | heat shock transcription factor A7A |