PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04387.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 245aa    MW: 27499.1 Da    PI: 9.8593
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04387.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3076129155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              ++rl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Rsa1.0_04387.1_g00002.1  76 RQRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 129
                              58*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.66973132IPR017930Myb domain
SuperFamilySSF466893.05E-2073133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-3075134IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-2477129IPR006447Myb domain, plants
PfamPF002498.2E-879128IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MREEDSNWSA KWEEELPSPE ELIPLSVSLI TPHLAMAFDL RSSNHRNNGS SGQHLPQTTP  60
PQAEFAGDEP ARTLKRQRLV WTPQLHKRFV DAVAHLGIKN AVPKTIMQLM SVEGLTRENV  120
ASHLQKYRLY LKRMQSGGGG GRGNVGESDH LFASSPVPAH FLHPTAVRQS SDHFIPSFVP  180
HHQFLHRQIS AVKMDQSLFL ARQSHQQPVL IRPSSLHLHS RVANYADDLE SGGKTVLTLF  240
PTRQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-3276132157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04387.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474779.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222103e-54MYBC1_ARATH; Transcription factor MYBC1
TrEMBLE4MY271e-125E4MY27_EUTHA; mRNA, clone: RTFL01-42-I09
TrEMBLV4N4S91e-125V4N4S9_EUTSA; Uncharacterized protein
STRINGXP_006398968.11e-126(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.14e-94G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]