PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04364.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 363aa    MW: 40574.2 Da    PI: 8.2021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04364.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-082247227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             +++ C+ + rtG C++G++C+F+H+p
  Rsa1.0_04364.1_g00002.1 22 GEPDCSCYIRTGLCRFGSTCRFNHSP 47
                             6789********************96 PP
2zf-CCCH27.74.5e-097092527
                             --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                             +C ++++tGtCk+G +Ck +H++
  Rsa1.0_04364.1_g00002.1 70 ECEYYLKTGTCKFGVTCKLHHPR 92
                             7*****************99985 PP
3zf-CCCH382.7e-12115139327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C +f+rtG+Ck+G++CkF+H++
  Rsa1.0_04364.1_g00002.1 115 EVDCAYFLRTGHCKFGATCKFNHPQ 139
                              578********************97 PP
4zf-CCCH37.34.7e-12240266127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+f+++tG Ck+G  CkF+H++
  Rsa1.0_04364.1_g00002.1 240 PGQPECQFYMKTGDCKFGTVCKFHHPR 266
                              5789*********************96 PP
5zf-CCCH38.51.9e-12286312127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++lC f++r+G+Ck+G++CkF+H++
  Rsa1.0_04364.1_g00002.1 286 PGEPLCVFYSRYGICKFGPSCKFHHPM 312
                              589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0262047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3992048IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-52247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-52548IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5636593IPR000571Zinc finger, CCCH-type
SMARTSM003560.00516592IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-77092IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99112140IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6112139IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10115139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6115139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4118138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22239267IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5239266IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8241266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6243268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4245267IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507285313IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9287312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6288313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4290311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MWQMNLSSDE TMELGSYPVR SGEPDCSCYI RTGLCRFGST CRFNHSPDRE LVIATARMKG  60
EYPERIGQLE CEYYLKTGTC KFGVTCKLHH PRNKAGIAGR RVSLNMLGYP LRSNEVDCAY  120
FLRTGHCKFG ATCKFNHPQP LPTTNVMVPA SGQQQSYPWS RASFIASPRW QDPSGYTPLL  180
MPQGVVPLQG WNPYTLGSLS PSGTGNDHNN YRNLQKNETG SSVPLGIYAL PSENVFPERP  240
GQPECQFYMK TGDCKFGTVC KFHHPRDRQP PPPDCLLSPI GFPLRPGEPL CVFYSRYGIC  300
KFGPSCKFHH PMEVFTYENT ASEAGEVLET SSGHSRRVSV SETNNQLQQP LVKALPLILL  360
ISE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04364.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491800.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A078GUD70.0A0A078GUD7_BRANA; BnaCnng05980D protein
TrEMBLA0A3P6FPD90.0A0A3P6FPD9_BRAOL; Uncharacterized protein
STRINGBo5g151450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]