PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04318.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 204aa MW: 23255.5 Da PI: 8.5758

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04318.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	192.2	1.8e-59	6	145	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 + +C+dCGnqakk+C+++RCRtCCk+++f+C+th+kstWvpa++r+++q ++++++++ ++ ++kr re+ + +s+ ss+ Rsa1.0_04318.1_g00001.1 6 GRRCEDCGNQAKKECVYMRCRTCCKTKAFHCQTHIKSTWVPAYRRSQKQLLQTQPQEER---LSTISPKRLREH--QPSSSPSSSG 86 569***************************************999876666554443...456677777776..4444444444 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +++t ++P e+ss a frcvrvss++dg+e++aYqt+v+igGhvf+GiL+dqGle+ Rsa1.0_04318.1_g00001.1 87 VR-----IHTTTGHFPVELSSVADFRCVRVSSIEDGKEQYAYQTTVNIGGHVFRGILHDQGLEK 145 33.....3445678*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.3E-56	6	144	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-27	9	50	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.4E-29	95	143	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK TKAFHCQTHI KSTWVPAYRR SQKQLLQTQP 60 QEERLSTISP KRLREHQPSS SPSSSGVRIH TTTGHFPVEL SSVADFRCVR VSSIEDGKEQ 120 YAYQTTVNIG GHVFRGILHD QGLEKVVVDH QSTHHYDPHH HQLHNKHHDQ ELLPPSSSSC 180 PLMITSPFTI SCPVPDFLLI KGLN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04318.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006841	6e-59	AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBank	CP002685	6e-59	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438354.1	1e-138	PREDICTED: protein SHI RELATED SEQUENCE 3
Swissprot	Q9SJT8	9e-86	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A3P6GXU0	1e-105	A0A3P6GXU0_BRAOL; Uncharacterized protein
STRING	Bo4g145920.1	4e-91	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-78	SHI-related sequence3