PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04196.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 287aa    MW: 32702.7 Da    PI: 8.4607
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04196.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.5e-1135661546
                             HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                              R +++lKKA ELS+LCd +++v+ +  +g+l
  Rsa1.0_04196.1_g00001.1 35 AREKTMLKKALELSILCDNQICVLHYDREGNL 66
                             599***********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00171472IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3061473IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-112295IPR002100Transcription factor, MADS-box
PfamPF003192.1E-63666IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MVSSSSPSDS STKMKKKKLS VRNQTSRFKK PFLLAREKTM LKKALELSIL CDNQICVLHY  60
DREGNLVNTL PEDQSQVTDI LGKYRNLSDG EKLKKSTNLS QFYNKKLVDE KKRSLTDAEE  120
RKRFTKKVGE FKGSLVDQFH ILQDRVRHLR YSQDHHHQPV QDQSPFLDVT SQKNHNFPEA  180
SPYGFFPAND FSSSLIEEDP LMMNFIPQDL GQQESFTNLL MSGDHVSTIT DQYLPSPAPS  240
STLCSSNHHQ GKFSVFLFNH ETSTFTQLPN SSSSSFDQGF TGTLTSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04196.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487989.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A3P5YBW81e-124A0A3P5YBW8_BRACM; Uncharacterized protein
STRINGBo6g015480.11e-124(Brassica oleracea)
STRINGBo6g015500.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.17e-32AGAMOUS-like 53