PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04146.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 176aa MW: 20318.1 Da PI: 9.4185 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.6e-19 | 24 | 77 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe+++++ e+++eLAk lgL++rqV vWFqNr+a+ k Rsa1.0_04146.1_g00004.1 24 KKRRLTFEQVNMLEKSFEEDNKLEPERKTELAKVLGLPKRQVAVWFQNRKARSK 77 5568999*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.7e-39 | 23 | 113 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 ekkrrl+ eqv++LE+sFee++kLeperK+ela+ Lgl +rqvavWFqnr+AR k kq+E+dy++Lk++yd+l +++e++ +e+e+ Rsa1.0_04146.1_g00004.1 23 EKKRRLTFEQVNMLEKSFEEDNKLEPERKTELAKVLGLPKRQVAVWFQNRKARSKVKQIERDYDVLKACYDSLLAKHESVISENEK 108 69************************************************************************************ PP HD-ZIP_I/II 87 Lreel 91 Lr+++ Rsa1.0_04146.1_g00004.1 109 LRSKV 113 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.167 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-16 | 22 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-18 | 22 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.6E-16 | 24 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.67E-15 | 24 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 26 | 86 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.9E-6 | 50 | 59 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.9E-6 | 59 | 75 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.5E-17 | 79 | 120 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDPKHDQESR SAPTGAINNQ PAEKKRRLTF EQVNMLEKSF EEDNKLEPER KTELAKVLGL 60 PKRQVAVWFQ NRKARSKVKQ IERDYDVLKA CYDSLLAKHE SVISENEKLR SKVLTLTKML 120 PPATNQTQRN FQVKLNSKGD DETISSSAAL VPLANDHYFT NVDETFGWWV WPSNLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04146.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232548 | 5e-99 | AC232548.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010J09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443926.1 | 1e-129 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 7e-40 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q6ZA74 | 1e-39 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q9XH36 | 1e-39 | HOX5_ORYSI; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | A0A078FBB5 | 1e-110 | A0A078FBB5_BRANA; BnaC06g12880D protein | ||||
STRING | Bo6g064420.1 | 1e-110 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16382 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-42 | homeobox 1 |
Publications ? help Back to Top | |||
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