PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04034.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24632.2 Da PI: 8.466 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.4 | 1.6e-22 | 52 | 100 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs +++y + Rsa1.0_04034.1_g00004.1 52 KEIKEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCDRVYSF 100 6799******************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-26 | 44 | 103 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.175 | 44 | 104 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-23 | 45 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-20 | 46 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-22 | 54 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-20 | 66 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-20 | 81 | 102 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MENGEATPTP CLLSTGQQKP MPTIPNVARK QRKEKKVQNP KTTKGRQRIE IKEIKEENRR 60 QVTFSKRRTG LFKKAAELSV LCGAQIGIIT FSRCDRVYSF GNVGTLIEKY LRKSPVTLRS 120 KFSDDVATGG GEEDGCMWWE RAVESVPEEE MEEYVKGLSG LRENLWTRIC ELGGDPTVQM 180 NAQAFPDLMA PVDWKMIDEN LTIRNDQDQA GKWIYGL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04034.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469618.1 | 1e-160 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A078IML8 | 1e-112 | A0A078IML8_BRANA; BnaC06g24370D protein | ||||
TrEMBL | A0A0D3CX45 | 1e-112 | A0A0D3CX45_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6QC05 | 1e-112 | A0A3N6QC05_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6FXM6 | 1e-112 | A0A3P6FXM6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g091550.1 | 1e-112 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 4e-60 | M-type_MADS family protein |