PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03996.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 1739aa    MW: 195055 Da    PI: 8.1986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03996.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.1e-1315001544347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                               +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Rsa1.0_03996.1_g00001.1 1500 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 1544
                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF145106.8E-1379135IPR029481ABC-transporter extracellular N-terminal domain
PROSITE profilePS5089313.646144417IPR003439ABC transporter-like
CDDcd032334.42E-68153399No hitNo description
Gene3DG3DSA:3.40.50.3005.0E-34154247IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.77E-30155417IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000051.3E-12161342IPR003439ABC transporter-like
SMARTSM003821.0E-7169401IPR003593AAA+ ATPase domain
Gene3DG3DSA:3.40.50.3005.0E-34282406IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF010611.8E-48496707IPR013525ABC-2 type transporter
PfamPF083701.4E-26713777IPR013581Plant PDR ABC transporter associated
PROSITE profilePS5089313.3398111048IPR003439ABC transporter-like
CDDcd032327.11E-1008111030No hitNo description
SuperFamilySSF525408.35E-358301033IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3005.1E-378331037IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000059.2E-14840975IPR003439ABC transporter-like
SMARTSM003823.1E-128481024IPR003593AAA+ ATPase domain
PfamPF010612.1E-5611211334IPR013525ABC-2 type transporter
PROSITE profilePS5129416.67314931549IPR017930Myb domain
SuperFamilySSF466898.22E-1614951548IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-1714961547IPR006447Myb domain, plants
SMARTSM007171.7E-1014971547IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-1014991543IPR009057Homeodomain-like
PfamPF002493.1E-1015001544IPR001005SANT/Myb domain
CDDcd001672.85E-815001545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:1901140Biological Processp-coumaryl alcohol transport
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1739 aa     Download sequence    Send to blast
METLSRSLSK RFGELLTGSS NHFSGRSGSI DDNDEEALKW AALEKLPTFT RLRTTIIQPH  60
DFVDVTKLGV DDRQKFIDSI FKVTEEDNEK FLKKLRKRID RVRIKLPTVE VRFEKLTIEA  120
DCHIGKRALP TLPNVALNIA GRGLSLFGFN FAKTTKLTIL RDASGIIKPS RMTLLLGPPS  180
SGKTTLLLAL AGKLDPSLKV TGRVTYNGHG LEEIVPQKTS AYISQNDVHI GVMTVQETLD  240
FSARCQGIGT RYDLLSELVR REKDAGILPE PEVDLFMKSI AAENVKSSLI TDYTLKILGL  300
DICKDTVIGD QMIRGISGGQ KKRVTTGEMI VGPTKTLFMD EISTGLDSST TYQIVKCLKE  360
MVRFTDATVL MSLLQPAPET FELFDDIILL SEGQIVYQGP RDHILSFFEA CGFKCPERKG  420
AADFLQEVSS RKDQEQYWAD TTKPYRYIPV SEFSKQFRTF HVGANLENDL SVPYDRFNSH  480
PASLVFSKQS VPKSQLFKIC WDRELLLIKR NAFFYVFKTV QIIIMALIAS TVYLRTGMGT  540
KDENDGAVYI GALMFSMIAN MFNGFAELSL MIQRLPVFYK QRDLLFHPSW TFTLPTFLLS  600
IPVSIFESVV WVSITYYLIG FSPEPSRFFK HLLVIFLTQQ MAGSIFRFIA TTCRSMILAN  660
TGGSLVVLLL FLLGGFIVPR GEIPTWWQWA YWVSPMTYSY DALTVNEMLA PRWMDQPSSD  720
NSTRLGLAVL KIFDVFSDPS WYWIGVGAVL GFTILFNILA TLALAYLNPL EKPQAIVSKE  780
SPEENRAING TESKNTYVKR GMVLPFTPYT MSFDNVNYYV DMPMEMKEEE VAKDKLQLLR  840
EVTGVFRPGV LTALMGVSGA GKTTLMDVLA GRKTGGYIEG DIRISGFPKR QETFARVSGY  900
CEQNDIHSPQ VTVRESLIYS AFLRLPKEVT KDEKMRFVDQ VMELVELKSL QRKRLTIAVE  960
LVANPSIIFM DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELLLM  1020
KRGGQVIYAG PLGQNSHKII EYFQAIPGVP KIKEKYNPAT WMLEVSSLAA EAKLEIDFAE  1080
HYVTSSLYQQ NKKLVKEVST PPQGAKDLYF STQFSESLLG QFKSCLWKQW ITYWRTPDYN  1140
LARFFFTFVA ALMVGSIFWR VGTTRDTAND LTKVIGAMYA AVLFVGINNA SSVQPLVAVE  1200
RTVFYRERGA KMYSALPYAL AQVVCEIPYV LIQTTYYTLV TYAMMCFEWT LVKFFWFFFV  1260
SFFSFLYFTY YGMMAVAITP NQQVAAIFAG AFYGLFNLFS GFLIPRPRIP KWWIWYYWIC  1320
PVAWTVYGLI VSQYGDQEDT IKVPGMMEDP TIKWYIENHY GYDPNFMGSI AAVCSHCSYN  1380
GHNSRTCPTR GTCGGSGGGS FGASSSSSSS AVKLFGVRLT DGSIIKKSAS MGNLSALALH  1440
HRLSPSSPLA TGNNNHNDSP LSDHGRYSNQ DNGGYLSDDL AHGSCSGSIH RRVERKRGVP  1500
WTEEEHRLFL VGLQKLGKGD WRGISRNYVT SRTPTQVASH AQKYFIRHTC STRRKRRSSL  1560
FDMVTDEMVT QEDQTLSKEP ECKTYLPSLE LKLNNATESE SPPPPPQEQP EEAIEPSNVL  1620
SPMLVPTGFF PPCFPVTYTI WLPATSTEHT LEASASSQQH QVLKPKPGFA KERTNMDELV  1680
GMSQLSIGME TRHEAETSHS PSPLSLKLIG EPSRPSAFHS NGSVSGSGLS KGSSAIQAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6eti_A7e-51159131937591ATP-binding cassette sub-family G member 2
6eti_B7e-51159131937591ATP-binding cassette sub-family G member 2
6feq_A7e-51159131937591ATP-binding cassette sub-family G member 2
6feq_B7e-51159131937591ATP-binding cassette sub-family G member 2
6hij_A7e-51159131937591ATP-binding cassette sub-family G member 2
6hij_B7e-51159131937591ATP-binding cassette sub-family G member 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be a general defense protein. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03996.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold/dark treatment. {ECO:0000269|PubMed:12430018}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0504480.0AY050448.1 Arabidopsis thaliana AT3g16340/MYA6_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488585.10.0PREDICTED: ABC transporter G family member 29 isoform X1
SwissprotQ94A180.0AB29G_ARATH; ABC transporter G family member 29
TrEMBLA0A3P5YXC90.0A0A3P5YXC9_BRACM; Uncharacterized protein
STRINGBo5g126190.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-152MYB_related family protein
Publications ? help Back to Top
  1. Sánchez-Fernández R,Davies TG,Coleman JO,Rea PA
    The Arabidopsis thaliana ABC protein superfamily, a complete inventory.
    J. Biol. Chem., 2001. 276(32): p. 30231-44
    [PMID:11346655]
  2. Martinoia E, et al.
    Multifunctionality of plant ABC transporters--more than just detoxifiers.
    Planta, 2002. 214(3): p. 345-55
    [PMID:11855639]
  3. Koo AJ,Ohlrogge JB
    The predicted candidates of Arabidopsis plastid inner envelope membrane proteins and their expression profiles.
    Plant Physiol., 2002. 130(2): p. 823-36
    [PMID:12376647]
  4. van den Brûle S,Smart CC
    The plant PDR family of ABC transporters.
    Planta, 2002. 216(1): p. 95-106
    [PMID:12430018]
  5. Kobae Y, et al.
    Loss of AtPDR8, a plasma membrane ABC transporter of Arabidopsis thaliana, causes hypersensitive cell death upon pathogen infection.
    Plant Cell Physiol., 2006. 47(3): p. 309-18
    [PMID:16415066]
  6. Maathuis FJ
    cGMP modulates gene transcription and cation transport in Arabidopsis roots.
    Plant J., 2006. 45(5): p. 700-11
    [PMID:16460505]
  7. Crouzet J,Trombik T,Fraysse AS,Boutry M
    Organization and function of the plant pleiotropic drug resistance ABC transporter family.
    FEBS Lett., 2006. 580(4): p. 1123-30
    [PMID:16506311]
  8. Eichhorn H,Klinghammer M,Becht P,Tenhaken R
    Isolation of a novel ABC-transporter gene from soybean induced by salicylic acid.
    J. Exp. Bot., 2006. 57(10): p. 2193-201
    [PMID:16720608]
  9. Sugiyama A, et al.
    Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family.
    DNA Res., 2006. 13(5): p. 205-28
    [PMID:17164256]
  10. Verrier PJ, et al.
    Plant ABC proteins--a unified nomenclature and updated inventory.
    Trends Plant Sci., 2008. 13(4): p. 151-9
    [PMID:18299247]
  11. Kaneda M, et al.
    ABC transporters coordinately expressed during lignification of Arabidopsis stems include a set of ABCBs associated with auxin transport.
    J. Exp. Bot., 2011. 62(6): p. 2063-77
    [PMID:21239383]
  12. Alejandro S, et al.
    AtABCG29 is a monolignol transporter involved in lignin biosynthesis.
    Curr. Biol., 2012. 22(13): p. 1207-12
    [PMID:22704988]
  13. Cerutti T,Delatorre CA
    Nitrogen and phosphorus interaction and cytokinin: responses of the primary root of Arabidopsis thaliana and the pdr1 mutant.
    Plant Sci., 2013. 198: p. 91-7
    [PMID:23199690]
  14. Borghi L,Kang J,Ko D,Lee Y,Martinoia E
    The role of ABCG-type ABC transporters in phytohormone transport.
    Biochem. Soc. Trans., 2015. 43(5): p. 924-30
    [PMID:26517905]
  15. Dubey M,Jensen DF,Karlsson M
    The ABC transporter ABCG29 is involved in H2O2 tolerance and biocontrol traits in the fungus Clonostachys rosea.
    Mol. Genet. Genomics, 2016. 291(2): p. 677-86
    [PMID:26520102]
  16. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]