PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03941.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 26772.4 Da PI: 7.0846 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.8 | 1.7e-12 | 21 | 89 | 17 | 90 |
E--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 17 vlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ f+++h +gk +++kt +l++ s ++Wev +++ lt+GWk+F a++L gD+v+Fk++g++ f Rsa1.0_03941.1_g00001.1 21 TILLGFFSKHiEGK-TNQKTWKLRSdASDQTWEVIQ--EGRT----LTGGWKDFTTAHDLTIGDIVIFKHEGDMVF 89 55567888885555.56789999997888*****99..5554....***********************9998877 PP | |||||||
2 | B3 | 62.4 | 7.5e-20 | 133 | 214 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +lp +++ ++k++ ++++l +++g+sW+v ++++ ++g+y++t+GWk+F+ +n+ + gD +vF l+g+ ++++++ v+ + Rsa1.0_03941.1_g00001.1 133 YLPVGATSSTALNKQC-QEMILVNKEGNSWTVSFRFSESGGKYYITRGWKKFCVDNRSDIGDLFVFNLVGDGKTTPLLCVCPE 214 6788888888888866.5*****************************************************9999**999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-15 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-15 | 4 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.05E-10 | 7 | 90 | No hit | No description |
SMART | SM01019 | 6.5E-13 | 9 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-8 | 22 | 89 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.01 | 42 | 97 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-14 | 126 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-18 | 133 | 214 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-15 | 133 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.18E-16 | 133 | 203 | No hit | No description |
PROSITE profile | PS50863 | 12.393 | 134 | 215 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.55E-16 | 143 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MANPHEPHFL KPLLPGFHSG TILLGFFSKH IEGKTNQKTW KLRSDASDQT WEVIQEGRTL 60 TGGWKDFTTA HDLTIGDIVI FKHEGDMVFH ATPFGPSCRE IQYTHPHIIK EEAEVDDAAM 120 IHGQCLLSPI TTYLPVGATS STALNKQCQE MILVNKEGNS WTVSFRFSES GGKYYITRGW 180 KKFCVDNRSD IGDLFVFNLV GDGKTTPLLC VCPESKECAE LLSKHLSRKR GDTASGSRVN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03941.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189464 | 1e-125 | AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022570613.1 | 1e-143 | B3 domain-containing protein REM9-like, partial | ||||
TrEMBL | A0A398AC83 | 1e-141 | A0A398AC83_BRACM; Uncharacterized protein | ||||
STRING | Bra022287.1-P | 1e-130 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 1e-51 | B3 family protein |