PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03938.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 33113.1 Da PI: 9.5921 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.7 | 5.8e-46 | 7 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrFhPt+eel+++yLk+ gk+ ++ evi +diy+++PwdLp+ + +e+ewyfF++r++k+ g r++r+t++gyWkatg Rsa1.0_03938.1_g00002.1 7 LPGFRFHPTEEELLDFYLKNMFYGKRSKV-EVIGFLDIYRHDPWDLPRLSTIGEREWYFFVPRERKQGDGGRPSRITDKGYWKATG 91 59************************999.99***************7777799******************************** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s ++ vglkktLvfy+grap g+ktdWvm+e+r+ Rsa1.0_03938.1_g00002.1 92 SDRKIISLsePRRMVGLKKTLVFYTGRAPGGTKTDWVMNEFRM 134 *****997556677***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.915 | 6 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.81E-54 | 7 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-23 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSKEIQLPGF RFHPTEEELL DFYLKNMFYG KRSKVEVIGF LDIYRHDPWD LPRLSTIGER 60 EWYFFVPRER KQGDGGRPSR ITDKGYWKAT GSDRKIISLS EPRRMVGLKK TLVFYTGRAP 120 GGTKTDWVMN EFRMPDHCTL PKNVVLCKIY RKATSLKVME QRADMEAKMK QTRPSSPLSS 180 CETNSFAGKE EDLMMTSFPF PQAEAMKEPN HILTLQEHNE NAKIKRKQRE AERNEPSSSL 240 KLPSGDLPLP ELLLPKQGFE LGQDQFFSIS PWLQNLTPII NLLYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-44 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03938.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738270 | 0.0 | KF738270.1 Brassica napus NAC transcription factor 36 (NAC36.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437138.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q10S65 | 3e-80 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D3D3K5 | 0.0 | A0A0D3D3K5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g015050.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3899 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-159 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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