PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03932.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 273aa MW: 31021.1 Da PI: 8.6727

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03932.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.5e-31	55	108	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Rsa1.0_03932.1_g00004.1 55 PRLRWTPDLHISFVRAVQRLGGPHRATPKMVLQMMNLKGLSIAHVKSHLQMYRS 108 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-28	51	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.396	51	111	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.2E-22	55	110	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.45E-13	55	109	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-8	56	107	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDGPFSPEKG SMLLDLNREE AAEEKNNEEE SSVEDEDQQV TSSNNVRQYV RSNMPRLRWT 60 PDLHISFVRA VQRLGGPHRA TPKMVLQMMN LKGLSIAHVK SHLQMYRSKK LEATSLHDVG 120 AMMGAQRNYL LDMIDMPYGD LRHAYYPKTV PSRVNSQGAV FTNLGANFVM RPSSWCNRIS 180 GNELHAVRVG LDRNNMENKT LPLLEIRRTS HEKRLREEQE REVSSLKRLK PMSGDENQLS 240 ELRNCRTKQT DGINTMLSLS LFSTSSGDSS DGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-17	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03932.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475937.1	0.0	PREDICTED: uncharacterized protein LOC108847243
TrEMBL	A0A0D3B6E2	1e-136	A0A0D3B6E2_BRAOL; Uncharacterized protein
STRING	Bo3g036170.1	1e-137	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	2e-99	G2-like family protein