PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03925.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 241aa    MW: 26609 Da    PI: 4.8108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03925.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-1880129254
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                               y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Rsa1.0_03925.1_g00003.1  80 SYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDEAEEAALAYDQAAFATK 129
                              69*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.02E-2979139No hitNo description
Gene3DG3DSA:3.30.730.103.7E-2980139IPR001471AP2/ERF domain
PROSITE profilePS5103222.07680138IPR001471AP2/ERF domain
SMARTSM003802.9E-3680144IPR001471AP2/ERF domain
PfamPF008475.8E-1280127IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2180140IPR016177DNA-binding domain
PRINTSPR003672.8E-108192IPR001471AP2/ERF domain
PRINTSPR003672.8E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSSSPSSWSS SQESFLWNES SLLDQSSDHQ SFFCPNYNYS DGFFSFESPE PTIKEEAQNG  60
DVSNSEEEEK IGGVIDEEKS YRGVRKRPWG KFAAEIRDST RNGVRVWLGT FDEAEEAALA  120
YDQAAFATKG SLAVLNFPVE VVRESLKKME NVNLQDGGSP IMALKRKHSL RNRPRGKKRS  180
TNSSSCSSNS SSHSSSSSTS WSSSSTSRSN EQSVVKQEGG TLVVFEDLGA EYLEQLLMSS  240
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2879141163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-2773140774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03925.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0123890.0JX012389.1 Brassica napus isolate T0061 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434793.11e-176PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-124ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078GH891e-131A0A078GH89_BRANA; BnaC04g13510D protein
STRINGBra018271.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-101ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]