PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03809.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 722aa    MW: 82152.5 Da    PI: 5.677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03809.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2131.6e-653125702256
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfse 86 
                              ++lL+ cA+ +s gd+   + lL++++ ++sp gd+ qRla++f++AL+arl++s+ ++ ++   + ++++++ ++ l+++k+f  
  Rsa1.0_03809.1_g00003.1 312 RTLLILCAQSISIGDMITSHDLLKQIRSQSSPLGDASQRLAHFFANALEARLQGSSGGTIQSYyDSVASKKRTAAQILKSYKTFLS 397
                              689***************************************************6555555543888888888************* PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              +sP++++ ++  N++Il+a + ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiTgv+ p++g   +e++e tg+rL+++++
  Rsa1.0_03809.1_g00003.1 398 ASPFMTLMYFYSNKMILDASKDASVLHIIDFGILYGFQWPMFIQRISESTTGPRKLRITGVELPQNGfrPTEKIEDTGRRLREYCK 483
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFle 255
                              ++gvpfe+n++++k++e+++lee++++p+E+laVn vl+ ++l d +   e+ +r+ +Lkl+++++P+v+  +  + + n++ F +
  Rsa1.0_03809.1_g00003.1 484 RFGVPFEYNAIASKNWETIRLEEFKIRPNEVLAVNAVLRFKNLRDVTPGEEDcPREGFLKLIRDMKPDVFLNSTVNGSFNASFFTT 569
                              ***********99*******************************9999999889****************************9998 PP

                     GRAS 256 r 256
                              r
  Rsa1.0_03809.1_g00003.1 570 R 570
                              7 PP
2GRAS573.9e-18569654276360
                     GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                               re+ er+  E+++ gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++ + +++ +  ++k +  + + ++++s+++++
  Rsa1.0_03809.1_g00003.1 569 TRENPERVHFEEVFYGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVEAELVESFRIKMKKWGyHKDFVLDQDSNWFLQ 654
                              47899**************************************************************9999999********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.898285647IPR005202Transcription factor GRAS
PfamPF035145.7E-63312570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MMESNFSRMV DVYEDYYDVS YLPNQIPNLG FGVPSSSDFD LRLDRVQPSI WVPSTQQDQD  60
LHHLHHDQDS PPPAAAAADE TDSENTLLKY VNQLLMEEET LAENQSMMSY DSLALRQTEE  120
MLQQVITDSQ TQSPYFITPY SNSISTSSCS SSGGGGEVLT SNSDSCVRLK TRTNSTGVLS  180
FQGPNMLPRF RQPANEIMFS DTNSVMQFKR GLDEASKFLP NIDQWLFNRE DEKSYISRVR  240
KHHHEPEEVE EARRSKQSAV NVDDGKLTEM FDKVLLLDGE YDPQVIEEGD NVSSKSPSSK  300
ILLERGQDVD FRTLLILCAQ SISIGDMITS HDLLKQIRSQ SSPLGDASQR LAHFFANALE  360
ARLQGSSGGT IQSYYDSVAS KKRTAAQILK SYKTFLSASP FMTLMYFYSN KMILDASKDA  420
SVLHIIDFGI LYGFQWPMFI QRISESTTGP RKLRITGVEL PQNGFRPTEK IEDTGRRLRE  480
YCKRFGVPFE YNAIASKNWE TIRLEEFKIR PNEVLAVNAV LRFKNLRDVT PGEEDCPREG  540
FLKLIRDMKP DVFLNSTVNG SFNASFFTTR ENPERVHFEE VFYGREVMNV IACEGVDRVE  600
RPETYKQWQV RMMRAGFKQK PVEAELVESF RIKMKKWGYH KDFVLDQDSN WFLQGQMEDA  660
GAHNKNITAT KEGQHVPQDS GALSPGTICS CPLVPATRKT TVARDHKSSR PVLLYNTPLH  720
FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-373156228328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03809.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602757.10.0PREDICTED: scarecrow-like protein 31
RefseqXP_013602758.10.0PREDICTED: scarecrow-like protein 31
RefseqXP_013602759.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A3P6G3020.0A0A3P6G302_BRAOL; Uncharacterized protein
STRINGBo8g114020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein