PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03794.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 140aa MW: 15547.3 Da PI: 6.5024 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 6.9e-15 | 22 | 101 | 11 | 97 |
HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + ++ l++p f+++h +++ kt +l++ s ++W vk+ ++ + lt+GWk+F++ ++L+ gD+++F+++g++ f + Rsa1.0_03794.1_g00003.1 22 FHTH-LSVPIAFFAKHlqESN-DHIKTAKLRTdASAKTWLVKV--DGLK----LTDGWKDFADGHDLQIGDIIIFRHEGEMVF--H 97 4455.99*********97333.34457777765888*******..6666....***********************9998888..8 PP EEEE CS B3 94 vkvf 97 v++f Rsa1.0_03794.1_g00003.1 98 VTAF 101 8777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-22 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-21 | 9 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.603 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.29E-18 | 12 | 101 | No hit | No description |
SMART | SM01019 | 2.6E-19 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-10 | 24 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MADQSLHAPT NPHFFQPLLP GFHTHLSVPI AFFAKHLQES NDHIKTAKLR TDASAKTWLV 60 KVDGLKLTDG WKDFADGHDL QIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIND 120 DSHDQTTNNN GHIASGSRMN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03794.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489775.1 | 1e-101 | PREDICTED: B3 domain-containing protein REM7-like | ||||
Swissprot | Q84WP3 | 4e-55 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A397XYM3 | 7e-74 | A0A397XYM3_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bra024695.1-P | 1e-74 | (Brassica rapa) | ||||
STRING | Bra024697.1-P | 4e-74 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 2e-57 | B3 family protein |
Publications ? help Back to Top | |||
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