PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03700.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 440aa    MW: 48681.2 Da    PI: 4.8416
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03700.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36381302103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y+++ed++ + ++sws  +nsfvv+d+ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  Rsa1.0_03700.1_g00002.1  38 FLSKTYDMVEDPASDAIVSWSPANNSFVVWDPPEFSRSLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 114
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+k+ll++i r+ks+
  Rsa1.0_03700.1_g00002.1 115 RGQKHLLKTISRRKST 130
                              *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3932122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6234127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3535127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MMDGVTGGDS KTGEATTAQL RNPHPATLLS ANAIPPPFLS KTYDMVEDPA SDAIVSWSPA  60
NNSFVVWDPP EFSRSLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LKTISRRKST QGHGSSSSNS QSHQGQGSMA SLSSCVEVGK FGLEEEVEQL KRDKNVLMQE  180
LVKLRQQQQS TDSKLQSTVK SLQTMEQRQQ QIMSFLAKAV QNPTFLSQFI QKQSESGNMH  240
VTEASKKRRL TEDGGTTAAD AAEGQIVKYQ PIRSDSMLWN MMNTDEKFPF LDGFSSSSPN  300
RDSGVTFQEV LLPTTSGQSQ AYAPPIPSTS TSLPIPPMPQ ETINDSPTEN YMNTDKDISR  360
AFISPSQFLD GGSVPNQLEG LPQGLDIDEL MSNCDIFEEY LAQSPVFGDE TTLESSDANG  420
GHVDKLIEEL GHLTSEKKQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-283613018123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03700.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472086.10.0PREDICTED: heat stress transcription factor A-1a
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLA0A078J7R80.0A0A078J7R8_BRANA; BnaCnng36910D protein
STRINGBo1g017810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]