PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03662.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19735.8 Da    PI: 10.6335
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03662.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.11.1e-0823561346
                             HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl 46
                             +  R +++l KA+ELS LC++e ++i f  +g+l
  Rsa1.0_03662.1_g00003.1 23 YKARVATVLRKAFELSELCGVELSIIWFDREGNL 56
                             456999**********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.5E-92299IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.7742363IPR002100Transcription factor, MADS-box
PfamPF003199.7E-62456IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKMKKVSVRK ETTLFKKPSS SLYKARVATV LRKAFELSEL CGVELSIIWF DREGNLVKTR  60
PENEEAKVRA MAERFSMLSE QERNKKSINL SGFLNKKMMD DKKESLKKKD KKFSDSLRSR  120
FQRFQESLLL DPKETTTSGV VVSTDPSSNL PSINQGHGSN YFMMMTKSSS VF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03662.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588208.15e-80PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A3P6G5501e-69A0A3P6G550_BRAOL; Uncharacterized protein
STRINGBo6g014360.15e-59(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.13e-20AGAMOUS-like 54