PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03613.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 515aa    MW: 57025 Da    PI: 4.216
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03613.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.29.6e-34410132128
                      NAM  32 evikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                              ++i  vd+yk+eP dLp +  +k++e++w++F++r++ky++  r+ r t +gyWkatgkd+ ++  +++ vglkktLvfy+g+ap+
  Rsa1.0_03613.1_g00005.1   4 NAIGVVDVYKIEPDDLPgQsVLKTGERQWFYFTPRSRKYPNAARSGRGTPTGYWKATGKDRVIFY-NSRSVGLKKTLVFYRGKAPT 88 
                              568999**********96447788999**************************************.999***************** PP

                      NAM 116 gektdWvmheyrl 128
                              ge+tdWvmhey++
  Rsa1.0_03613.1_g00005.1  89 GERTDWVMHEYTM 101
                              ***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.6261124IPR003441NAC domain
SuperFamilySSF1019412.22E-393124IPR003441NAC domain
PfamPF023651.1E-1220100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
LTVNAIGVVD VYKIEPDDLP GQSVLKTGER QWFYFTPRSR KYPNAARSGR GTPTGYWKAT  60
GKDRVIFYNS RSVGLKKTLV FYRGKAPTGE RTDWVMHEYT MNEEELDRCN NAKDYYALYK  120
LFKKSGSGPK NGEDYGAPFQ EEEWLDDDDD SEDGDDIAVP EEPLVRHEDT PCVDNGRLFE  180
PVNVQLDDFE EILNGFPRAP LVPQSCIDGI AFSVPLVNSE EELQSTLVNN SSGEFLSPQQ  240
TGGFLPNGEP YIRPSSSAVE PFVFEKEDYI EVDDLLAPEL GASSVERPAQ FLNPGEFGDF  300
SEFDQLFHDV SMSLDMEPIA QETSVHPSSP CKFADNTSNE KQHFLNQQFQ DQIPENKVNN  360
NDFTDDVWFQ DDDDDQAVLF DQPQSITSGS FAPLPSSGVM PGTANVNAQD QEGENGGGTS  420
PFTSALWAFM DSIPSTPASA CEGPINRTFV RMSSFSRIRF SGKANGTPSV TSTVVVAKKR  480
RRNRGFLLLS IVGALCAIFW VFIATVGASG RPVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-31113044171NO APICAL MERISTEM PROTEIN
1ut4_B7e-31113044171NO APICAL MERISTEM PROTEIN
1ut7_A7e-31113044171NO APICAL MERISTEM PROTEIN
1ut7_B7e-31113044171NO APICAL MERISTEM PROTEIN
3swm_A8e-31113047174NAC domain-containing protein 19
3swm_B8e-31113047174NAC domain-containing protein 19
3swm_C8e-31113047174NAC domain-containing protein 19
3swm_D8e-31113047174NAC domain-containing protein 19
3swp_A8e-31113047174NAC domain-containing protein 19
3swp_B8e-31113047174NAC domain-containing protein 19
3swp_C8e-31113047174NAC domain-containing protein 19
3swp_D8e-31113047174NAC domain-containing protein 19
4dul_A7e-31113044171NAC domain-containing protein 19
4dul_B7e-31113044171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03613.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485609.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
RefseqXP_018485610.10.0PREDICTED: NAC domain-containing protein 17-like isoform X2
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A078GS920.0A0A078GS92_BRANA; BnaA05g18390D protein
TrEMBLA0A397ZB670.0A0A397ZB67_BRACM; Uncharacterized protein
STRINGBra034436.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]