PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03370.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 265aa MW: 29917.3 Da PI: 9.9147 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.4e-32 | 111 | 164 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Rsa1.0_03370.1_g00002.1 111 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 164 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.56E-15 | 108 | 164 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 109 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-24 | 111 | 164 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-7 | 112 | 163 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MFESRSNMRG SNSVPDLSLQ ISLPNSHAEK PLHSSNRSST TSSDSGSSLS ELSHENGFLK 60 KHLLSLGFNH HNPYHHYQRH SSKMFQPQIY GRDFKRTSSS VVSLKRSIRA PRMRWTSTLH 120 AHFVHAVQLL GGHERATPKS VLELMNVKDL TLAHVKSHLQ MYRTVKCTDK GSSVERKVEK 180 EAEQKTEDNN NNNEDVDADP NSPNSSSVQK TKRSPWSSTR GLSMSISTHA DPHMEINHIT 240 KDDVEKAHLS LEFTLGRPSW GIDYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-16 | 112 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00107 | PBM | Transfer from AT5G42630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03370.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449685.1 | 0.0 | PREDICTED: probable transcription factor KAN4 isoform X1 | ||||
Swissprot | Q9FJV5 | 1e-125 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | A0A398AIL7 | 1e-141 | A0A398AIL7_BRACM; Uncharacterized protein | ||||
STRING | Bra035311.1-P | 1e-137 | (Brassica rapa) | ||||
STRING | Bo2g115180.1 | 1e-141 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6572 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.1 | 1e-112 | G2-like family protein |
Publications ? help Back to Top | |||
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