PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03325.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 1091aa    MW: 121031 Da    PI: 9.5569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03325.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31204261260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK++kg e+prsYYrCt+ +Cpvkkkvers+ d+++++i+Y+g+H+hek
  Rsa1.0_03325.1_g00001.1 204 DDGYNWRKYGQKPIKGCEYPRSYYRCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHEK 261
                              8****************************************.***************85 PP
2WRKY1031.7e-32349407159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Rsa1.0_03325.1_g00001.1 349 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 407
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28195263IPR003657WRKY domain
SuperFamilySSF1182904.18E-25201262IPR003657WRKY domain
SMARTSM007748.3E-36203261IPR003657WRKY domain
PROSITE profilePS5081124.122204262IPR003657WRKY domain
PfamPF031062.3E-24204259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-35335409IPR003657WRKY domain
SuperFamilySSF1182901.57E-28341409IPR003657WRKY domain
PROSITE profilePS5081137.711344409IPR003657WRKY domain
SMARTSM007741.3E-37349408IPR003657WRKY domain
PfamPF031061.0E-24350407IPR003657WRKY domain
Gene3DG3DSA:3.30.200.207.4E-31569672No hitNo description
SuperFamilySSF561127.01E-90569866IPR011009Protein kinase-like domain
PfamPF000691.7E-70574859IPR000719Protein kinase domain
SMARTSM002202.6E-94574859IPR000719Protein kinase domain
CDDcd078406.51E-137574859No hitNo description
PROSITE profilePS5001145.785574859IPR000719Protein kinase domain
PROSITE patternPS001070580603IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.104.4E-57673928No hitNo description
PROSITE patternPS001080694706IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MAVEDEVSSM MRTTMLVAPT RPTITVPQRP PAIETAAYFF GGGDGFSLSP GPLSFVSSLF  60
VDNFPDVLTP DNQRTTSFSQ LLAGAMSGSP GSGRSTAGML PAGGGPLFTI PSGFSPSSLL  120
TSPMFFPPQQ SPTQTGFVQP ESQPKRPDSF PNQMPSSTST VMHGRQSCEG SQADHRAISH  180
YNNPANNNNT NRSYNVVNVD KPADDGYNWR KYGQKPIKGC EYPRSYYRCT HVNCPVKKKV  240
ERSSDGQITQ IIYKGQHDHE KPQNRRGGGG GVRGSGEIGD IHYIGGVGQM ESSEDSGYAN  300
DHHDNDNDDD NEDLPASKIR KIDGGMSTTH RSVTEPKIII QTRSEIDLLD DGYRWRKYGQ  360
KVVKGNPHPR SYYKCTTANC TVRKHVERAS TDVKAVITTY EGKHNHDVPA ARNGTAAATS  420
ATAGTSDHHR IVLPVLDPFT RPGSILTPPG NSPLTISFIM GCFNSKHSSP AAPPRPLRRR  480
SDTAAHPGHP QNNHKPHVLP TPPSHRRVVT SSPKKHRNND DDAPRSRTTG VSLRSGLSHG  540
NVEAEQVAAG WPSWLTSAAP EAVHGLVPLR AEDFEKREKI GQGTYSNVFR ACEISTGRVM  600
ALKKIRVQNF ETENIRFIAR EIMILRRLDH PNIMKLEGII ASRNSNSMYF VFDYMEHDLE  660
GLCSSPDINF TEAQIKCYMQ QLLLAVEHCH LRGIMHRDIK AANILVNNKG VLKLADFGLA  720
NIVTPKNKNQ LTSRVVTLWY RAPELLMGST NYSVSVDLWS VGCVFAEILT GRPPLKGRTE  780
IEQLHKIYKL CGSPDEELWR KNKLHPQTKM FGQQHQYEGC LRETFEEFPK TAVNLLENLF  840
SVDPDKRGTA SSALMSEYFN TRPYACDPST LPKYPPNKEM DAKYREELQR RRRATIKKRD  900
NLVPKQTGKP RRTIKDPLSK LPTQQETKKE AETEIILQTT PSETSQATTR SEFPYTALSQ  960
ATAPASGFAW AGAKKRKEND AASTLTYNQP AGSASHVSGM SMAFAKNTFG LTINEDRPFL  1020
RPHVSLDSSG DVLLYPNVHH KKKEEDNMSS DLRNGGANPK IFQTNGMNEI LRRTESDARV  1080
AVRRPPRIER G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4nst_A4e-7058089521341Cyclin-dependent kinase 12
4nst_C4e-7058089521341Cyclin-dependent kinase 12
5efq_A3e-7058090219345Cyclin-dependent kinase 13
5efq_C3e-7058090219345Cyclin-dependent kinase 13
6ckx_A4e-7058089521341Cyclin-dependent kinase 12
6ckx_C4e-7058089521341Cyclin-dependent kinase 12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03325.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288975.10.0probable WRKY transcription factor 58
TrEMBLM4FDH60.0M4FDH6_BRARP; Uncharacterized protein
STRINGBra039147.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-169WRKY DNA-binding protein 58