PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03316.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 354aa    MW: 40385.5 Da    PI: 9.2177
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03316.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.3e-213580651
                             HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +s + +++++R+++++ KA ELS+LC++ev+vi+++s+g+l+++++
  Rsa1.0_03316.1_g00003.1 35 SSLKATSLANRQETVFRKARELSILCGVEVCVIYYGSDGELRTWPK 80
                             78899***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-41581IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-1636111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.3113882IPR002100Transcription factor, MADS-box
CDDcd002663.57E-1438106No hitNo description
PfamPF003194.6E-123978IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MASSSFFPSS SSSAMTTKKT TKASQLRATL FQKASSLKAT SLANRQETVF RKARELSILC  60
GVEVCVIYYG SDGELRTWPK DREKVKDMAL RYSRLSDVKR HTKQHDLDTF LEEIDDPKNK  120
KKVKLDSGYK YPDWDPRFDN FSAEQLTELI QSLERKQAIM QHRLRAVLES QRQRSMRYMN  180
QEKMQMNHPQ LQQQLPNQAQ SLAPLPNSLT VYQYPNMEMY SELLGAQDTG MNGSLGTNML  240
PYNSFNTNCV NMFPNQFSQN CSKVEVFPQG TGINSMKVED YTGPVWAQGS GINGLQNMDM  300
YRYNNNNNSN TNGFSHQLVQ FPAQRAAAPV YQCIDGSTQN NVPTQMRFNL SQCL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03316.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435453.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB23e-77AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A3N6RXJ51e-168A0A3N6RXJ5_BRACR; Uncharacterized protein
STRINGBo1g117390.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.14e-70AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]