PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_03302.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 23487.7 Da PI: 9.8299 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109 | 5.5e-34 | 8 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWka 85 lp+G+rFhPt++el+ +yL +k+ +++l+ ++i+ +d++ ++P ++p ++ee++ yfF+k++++ + + +r + + +gyWka Rsa1.0_03302.1_g00003.1 8 LPVGYRFHPTEQELILHYLLPKALASPLPS-SIIPVFDVFFSHPLTFPG--DQEERQRYFFCKKKQEVSgNAHRIKTSSGDGYWKA 90 799*************************99.88***************3..4577899*****999887355666667889***** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k++ev++ +g++vg+++tLvfy ++++ + +kt+W+m ey+l Rsa1.0_03302.1_g00003.1 91 IRKEREVIA-RGRTVGIRRTLVFYgtNNSSANCNKTRWCMTEYSL 134 *********.999***********7656777889*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-40 | 5 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.943 | 8 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-22 | 9 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MVNGGMKLPV GYRFHPTEQE LILHYLLPKA LASPLPSSII PVFDVFFSHP LTFPGDQEER 60 QRYFFCKKKQ EVSGNAHRIK TSSGDGYWKA IRKEREVIAR GRTVGIRRTL VFYGTNNSSA 120 NCNKTRWCMT EYSLAGFAST KVFGEWAVYK VYKRKESKGR RQRRSKGRDH EEEDLNCIHF 180 TIGTDHETCP PPPSPPTSAD ESGSII |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-22 | 6 | 155 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_03302.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467010.1 | 1e-155 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | V4LG11 | 1e-117 | V4LG11_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399904.1 | 1e-118 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14000.1 | 2e-87 | NAC domain containing protein 84 |