PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03295.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 205aa MW: 23793.2 Da PI: 8.9033 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.1 | 2.5e-10 | 92 | 142 | 7 | 57 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +rk +NRe+ArrsR +K+ +++ L+ +L +eN++ ++l ++ Rsa1.0_03295.1_g00001.1 92 KKRKKSNRESARRSRMKKQRYLDDLRSQLNQLNTENREIGNQLRYVMHYCQ 142 68999*******************************987766666555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.9E-8 | 85 | 135 | No hit | No description |
SMART | SM00338 | 2.4E-11 | 86 | 150 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.714 | 88 | 134 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 3.41E-15 | 91 | 142 | No hit | No description |
SuperFamily | SSF57959 | 9.64E-10 | 92 | 140 | No hit | No description |
Pfam | PF00170 | 1.6E-7 | 92 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 93 | 108 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSSILPGFLS QPEVANHVLT LETRFIPWDD GASDLLSIFD SPVCPVEVNP AVEKKNSCQI 60 LNKSHSCPDM EDKPSNLTGL NVCFPKRDEW QKKRKKSNRE SARRSRMKKQ RYLDDLRSQL 120 NQLNTENREI GNQLRYVMHY CQHANMENDR LRLEHKILHE KLLNLRQALV LRQIQQSSTC 180 ATWSCVNSTV VTVHQNTSML RDHVI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 108 | QKKRKKSNRESARRSRMKK |
2 | 91 | 95 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03295.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619717.1 | 1e-114 | PREDICTED: regulatory protein opaque-2-like | ||||
TrEMBL | A0A078HJJ0 | 1e-124 | A0A078HJJ0_BRANA; BnaAnng05020D protein | ||||
TrEMBL | A0A398AJZ8 | 1e-124 | A0A398AJZ8_BRACM; Uncharacterized protein | ||||
STRING | Bo2g168170.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 3e-42 | basic leucine-zipper 5 |