PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03276.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 677aa    MW: 76157.1 Da    PI: 8.3985
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03276.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52.1e-07247268426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              ++Cr+fa  G C+ G +C+F+H 
  Rsa1.0_03276.1_g00005.1 247 VPCRYFAV-GNCRNGTSCRFSHH 268
                              69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.699243270IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4244269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5246268IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4247268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4248270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MSGSGRKRVS KWDSKQEDTE NGNDYVHKSG SYYHDKDPER ADFYPEGNGR NGSRRSVPDD  60
DNDEEEHLKS RQHPGEAWPS RSRVSHEDGH GDDAMMSYYD TRKSSEQDES RQPYWDRPRT  120
RRSGSRSNSR SMSRSRSRSR SRSPFQRVRR DARGSYDRHK TRARVSPRSG RDTDGRYSRA  180
GGDYDWEAKN RDSKHYSEDS REEYPLRRSD YPEDHSNSRR ETSDPILRSH RDRRDVPERE  240
YNRISNVPCR YFAVGNCRNG TSCRFSHHLE RKPQQDQMFS RHDNNNHSGT TERMRNSHRW  300
NERADTGKSG EGAKNNNGSW IGDMEMSPDW NYGVKTLNKP LNQEHGVIKD TLAPAYEHGS  360
AATSQRIGMF PTLGDKTVAT SHHGGASNNI APPIQAFSQN IENHSAVPYQ STPLAVGGSQ  420
VLLPPAATVT HLPENGSAQN TVSREELNHI SNISATLAQF FGNGQLQSTL NPKQAMQVPQ  480
VYGKEEHSSQ TQSDLLTNNS IQTGVVVPAV TTLQINNSDS LISLAGNPKA SSEENMEKKI  540
DKEARKEADV RKSGQEGEDE TGKDAENVGE EEEEDDGAGD ENSKKEKDPK GMKAFKFALV  600
EIVKELLKPA WKEGGMNKDA YKNIVKKAVD KVTGAIQAGN IPQTQEKIDH YLSASKPKLT  660
KLVQVLSPQL KIQFTVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RSRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03276.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463670.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
TrEMBLA0A3N6RQL60.0A0A3N6RQL6_BRACR; Uncharacterized protein (Fragment)
STRINGBo6g015750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-15C3H family protein