PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03276.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 327aa    MW: 36894.2 Da    PI: 7.0922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03276.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.94.2e-112467846
                             HHHHHHHH.....HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF  8 nrqvtfsk.....RrngilKKAeELSvLCdaevaviifsstgkl 46
                             n+q+ f k     R +++lKKA EL vLCd e++v+ +  +g+l
  Rsa1.0_03276.1_g00003.1 24 NNQTRFKKpfllaREKTMLKKALELTVLCDNEICVLHYDREGNL 67
                             5666665555555*************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00191373IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-102790IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5873774IPR002100Transcription factor, MADS-box
PfamPF003195.2E-63767IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVSFSSSSSD SSTKMKKKKL SVTNNQTRFK KPFLLAREKT MLKKALELTV LCDNEICVLH  60
YDREGNLVNT MPEDQSQVTG ILDKYRNLSD GVLQQQFYNK KLVDEKKRSL TDAEERKRFT  120
KKVGDFKGSL VDQFHILQDR VRHLRYSQDH HHHQTVQDQS PFLDVVSDKN HNFPEASSYG  180
FFPVNDFSSS SLIEEENPLM MNFCPPVIND PVFDHQQQIG SLTNPLLMSG DASTSTEQDM  240
SPPVYNYATT GSSNQSSKFS MFLFNHETAT FTRLPNSVSS SFDQGLTPPY TTNLGTALHG  300
AQGFNFGCSN NLNSLGFNFG CNKNLCT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03276.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463672.10.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLM4DQH41e-142M4DQH4_BRARP; Uncharacterized protein
STRINGBra018767.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.19e-26AGAMOUS-like 53