PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03270.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29048.5 Da    PI: 6.6765
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03270.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ien   rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
  Rsa1.0_03270.1_g00002.1  9 KKIENVNSRQVTFSKRRNGLMKKAKELSILCDAEVALIIFSSTGKVYDFSS 59
                             68***********************************************96 PP
2K-box51.54.3e-181031802299
                    K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              + +++e+e Lq  + +l+G++Le +s+ +L +Le+qL++sl +++++K++lll+q+e+++ +e+++ een+ Lrk++e
  Rsa1.0_03270.1_g00002.1 103 ESMRSELERLQLAIERLKGKELEGMSFSDLISLENQLNDSLHSVKNQKTQLLLSQVERSRLQERRALEENQLLRKQVE 180
                              67999**********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.959161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-31274IPR002100Transcription factor, MADS-box
CDDcd002656.58E-41269No hitNo description
PRINTSPR004044.4E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.18495185IPR002487Transcription factor, K-box
PfamPF014861.3E-14101179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGRIEIKK IENVNSRQVT FSKRRNGLMK KAKELSILCD AEVALIIFSS TGKVYDFSSG  60
CMEQTLSRYG YNAETADHKQ REQQQLLLCS SSHENGVVLR KDESMRSELE RLQLAIERLK  120
GKELEGMSFS DLISLENQLN DSLHSVKNQK TQLLLSQVER SRLQERRALE ENQLLRKQVE  180
MLGRGSSGPK GLSEIPQFSS PQAEHESSSS DDDDNDNEDH YSDTSLQLGL SWSGYCRKTK  240
KPKIESPCDN SGSQVASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20172173MEF2C
5f28_B4e-20172173MEF2C
5f28_C4e-20172173MEF2C
5f28_D4e-20172173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03270.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437123.10.0PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ9M2K81e-134AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A397YLY01e-163A0A397YLY0_BRACM; Uncharacterized protein
STRINGBo6g072840.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-128AGAMOUS-like 18