PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03187.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 847aa MW: 93311.7 Da PI: 6.3183 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.6 | 6.2e-20 | 567 | 663 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ l +ed ++r+W++++++ ++ks++y+l+ ++ +Fvk ngL+egDf+v+ Rsa1.0_03187.1_g00001.1 567 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNLRYRFwpNNKSRMYLLE-NTGDFVKTNGLQEGDFIVI 651 79*************************999999********7778*******99777777777777.******************* PP EE-SS.SEE..EEE CS B3 83 kldgr.sefelvvk 95 + ++ ++++++++ Rsa1.0_03187.1_g00001.1 652 Y--SDvKCGKYLIR 663 *..55599988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-27 | 561 | 670 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 2.55E-37 | 564 | 665 | No hit | No description |
SuperFamily | SSF101936 | 1.12E-21 | 565 | 659 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.659 | 566 | 668 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-18 | 566 | 668 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-16 | 567 | 662 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MKSLHVEANG GDLAEDCGIL AGGSDEAVLM DGMGEVGREI WLDNHEGDHG HGHREDDDII 60 VHHDPSMFYG DLPTLPDFPC MSSSSSSSTS PAPVNAIVSS ASSSSAASSS TSSAASWAIL 120 KSDGEDPTTQ NQNQYASGNC DVESSAALQS TASMEIPLDS TQGFGCGEGG GDCIDMMETF 180 GYMDLLDSNE FFDTSAIFNQ DEDTQNPNLM EQALERKDQV VIPVTENNNS TEGDMQMMNP 240 PLEQEDDLAG VFLEWLKNNK ETVSADDLRK VKIKKATIES AAKRLGGGKE AMKQLLKLIL 300 EWVQTNHLQR RRTNDLSYQQ DPFQNPNILP PSDQTCFSPS TWVPPPPQPP PPPPQQQAFV 360 SDPGFGYMPA PNYPSQEYFP SLESPPTWPP PPPPQSGPMP LQQFTMPNPQ YTPFQDPGGG 420 FTGYNMNPYQ YPYLPSSGQM RDQGLLRLCS SATKEARKKR MARQRRFLSH HHRHNNNQQN 480 QTQIGEGCGA VDPQLNHVPT TATGGTWMYW PNVTTMPPPV SSQLPAMETQ LPTMDRAGSS 540 SVMPRQQVVP DRRQGWKPEK NLRFLLQKVL KQSDVGNLGR IVLPKKEAET HLPELEARDG 600 ISLAMEDIGT SRVWNLRYRF WPNNKSRMYL LENTGDFVKT NGLQEGDFIV IYSDVKCGKY 660 LIRGVKVRQP AGQKLEAPSS SAAVTKRQSK SQRSINNNSP LTLALLSSFS LTFLKKSIRR 720 GYRFRPTGEL LQPPSRCSIR LKPSGFDSGA VDSILVMAAG LKFCFYSGGD GDGCVADACR 780 VVGGGFHRQR WRRRSFSDLV WCENERAGTG SFLRRLDPGL MQRRRVSSAK IGVGQVGGHA 840 QASDALI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-37 | 562 | 669 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-37 | 562 | 669 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03187.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF672728 | 0.0 | KF672728.1 Brassica napus cultivar Westar abscisic acid insensitive 3 (ABI3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490384.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing transcription factor ABI3 | ||||
Refseq | XP_018490385.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing transcription factor ABI3-like | ||||
Swissprot | Q01593 | 0.0 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A0D3BD64 | 0.0 | A0A0D3BD64_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g083650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10280 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 0.0 | B3 family protein |