PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03153.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 268aa    MW: 30893.8 Da    PI: 10.027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03153.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191764148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd ll+d+v+++G g+W+++a+  g++R +k+c++rw +yl
  Rsa1.0_03153.1_g00003.1 17 KGPWTAEEDRLLIDYVRLHGEGRWNSVAKLAGLKRNGKSCRLRWVNYL 64
                             79********************************************97 PP
2Myb_DNA-binding52.61e-1670114147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Rsa1.0_03153.1_g00003.1  70 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                              7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1831268IPR017930Myb domain
SuperFamilySSF466891.15E-3014111IPR009057Homeodomain-like
SMARTSM007175.6E-171666IPR001005SANT/Myb domain
PfamPF002494.5E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241871IPR009057Homeodomain-like
CDDcd001672.94E-121964No hitNo description
PROSITE profilePS5129419.68269119IPR017930Myb domain
SMARTSM007174.7E-1569117IPR001005SANT/Myb domain
PfamPF002494.9E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2472118IPR009057Homeodomain-like
CDDcd001672.49E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSLWGAEWGM VEKGWRKGPW TAEEDRLLID YVRLHGEGRW NSVAKLAGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPHEETI ILELHAKWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKTK  120
SPTNNAKKTK NRILKRQQFQ QLRQMELQQE QQTLQFNQID MKKIMSLLED DNNNNSCGNN  180
FSSSSSGRSG EGGAFYVPHQ ITHSTIVSGY DPNGNGFFPV PIPEANVNED YKFWDGIWNL  240
DLEGQGSFGG GACVPRKNCF QNVSIPFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03153.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489869.11e-166PREDICTED: myb-related protein 305
TrEMBLA0A3N6RMV71e-155A0A3N6RMV7_BRACR; Uncharacterized protein
STRINGBo7g033260.11e-156(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-128myb domain protein 305