PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03097.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 278aa    MW: 32369.6 Da    PI: 6.6054
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03097.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-091152344
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             i + + r+ tf  R+n ++ K +EL vLCd++ +  i+ +++
  Rsa1.0_03097.1_g00002.1 11 ITDGTEREATFNLRKNELMQKLHELHVLCDVDTCAFIYNQSN 52
                             778899****************************99998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.615156IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-19293IPR002100Transcription factor, MADS-box
CDDcd001201.32E-17260No hitNo description
PRINTSPR004044.7E-6323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-101152IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGKKKMDITY ITDGTEREAT FNLRKNELMQ KLHELHVLCD VDTCAFIYNQ SNPIPEVWPS  60
HSEVKSILEK FEKFSEKKKT CRSVNHEEFL HQMTEKARTK RQKQNAQNKE KYMRELMFAF  120
LSGNMKDLSL KNDDRSELCS FIDKYLKELV HHKNQTLNNP NFEIGQSSSM ALDMNIAQTS  180
IAEAGSSSFL VSKTPRSSEL TKMLQSVISS YYSDVPHENL VTSIPSTRSN QEVYIPVMYQ  240
DESYSQNKNQ NLEQGFVEEM MKIGEQTGFP WMEDNHRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03097.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437602.10.0PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
TrEMBLA0A078HM651e-174A0A078HM65_BRANA; BnaC01g28010D protein
STRINGBo1g088030.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.12e-74AGAMOUS-like 46