PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03052.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 330aa    MW: 36505.3 Da    PI: 5.3554
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03052.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.1e-18220254135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Rsa1.0_03052.1_g00003.1 220 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 254
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-831308IPR016679Transcription factor, GATA, plant
SMARTSM004018.7E-18214264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.635214250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14215251IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-16216278No hitNo description
CDDcd002026.45E-15219266No hitNo description
PfamPF003201.2E-15220254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEEEAHEFL HTADHFAVDD LLVDFSNDDD EENDITVDSD GTNTATAVTD SSNSSSLSPA  60
GLPNFQGDVQ DGTSFSGELC VPSDELAELE WLSNFVEDSF STDDVQKLQL ISGYKARPDP  120
KPEPENPNSN SPIFTTDVSV PAKARSKRSR AAACNWASRG LLMEAVYDNP FTGETILSRH  180
HLSPPTSPTS MTHPAKKQAL DGLRRKKDSL LDSGAEERRC LHCATDKTPQ WRTGPMGPKT  240
LCNACGVRYK SGRLVPEYRP AASPTFVLAK HSNSHRKVME LRRQKEMTKA HHEFIHHHHG  300
TETAMIFDVS SDGDDYLIHH HVGPDFGQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03052.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478673.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-170GAT12_ARATH; GATA transcription factor 12
TrEMBLM4D0660.0M4D066_BRARP; GATA transcription factor
STRINGBra009864.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-131GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]