PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02970.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 346aa    MW: 38135.1 Da    PI: 4.8946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02970.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102763161055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Rsa1.0_02970.1_g00003.1 276 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 316
                              9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14267333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12271327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-11275320No hitNo description
PfamPF000101.3E-7276316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAMGEWSNN LGGMYTYATE EADFMNQLLT SYDHPGTGSS TGTASADHHG LYWNLGSHHN  60
HLTLMPEASS FCFSGESSSY SEYYAVAPPA VRENNNGSMD FDMIDVTINT NSYLVGEETS  120
ECDVEKYSSG KTRLPLGAVL ETNDDQESML QPEMSVTTTD HQKSLTGSKK RSRATAVDKN  180
KKAKVGKRGQ KSLEMSGDNS NGGEEEEGEK VKKRKTGAIM SRQNSSVTLC SEDESHCPSQ  240
DAGEEDEDDA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD  300
ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APIAFNGMDI GLNSSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02970.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450133.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLM4F0J20.0M4F0J2_BRARP; Uncharacterized protein
STRINGBra034587.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-171ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]