PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02947.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 272aa    MW: 29588.2 Da    PI: 7.8919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02947.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086180202123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+  Fs+   L  H+r+H
  Rsa1.0_02947.1_g00002.1 180 HECSICKAEFSSGQALGGHMRRH 202
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.4E-12113138IPR007087Zinc finger, C2H2
SuperFamilySSF576672.45E-9113136No hitNo description
PROSITE profilePS5015710.408114141IPR007087Zinc finger, C2H2
SMARTSM003550.095114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576672.45E-9175202No hitNo description
Gene3DG3DSA:3.30.160.605.1E-4177204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12179204IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328180207IPR007087Zinc finger, C2H2
SMARTSM003550.031180202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTSFHEETRL VLLTKGKRTK RPRSASPHMN AEAVSGVCSE DRSLEAKEEG AGEVEFQGAT  60
EEDQDMASCL MLLSQGHKAK SSGEHLLTQK IGFLSNKKQK PVASFLGLGL DGVYPCKTCD  120
KSFHSFQALG GHRASHKKPK RDERNSSSAV ETVETAEAVG SFLSLQVSSG DGSKKQEKTH  180
ECSICKAEFS SGQALGGHMR RHRGLTVNAN ATSVTKTALS SSHHQEPNHP KNFLELDLNL  240
PAPEDEPKYV FASKNQMLLF ASVSNSLIDC HH
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02947.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468342.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A3P5ZWJ31e-173A0A3P5ZWJ3_BRACM; Uncharacterized protein
STRINGBra028831.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-133C2H2 family protein