PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02891.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 275aa    MW: 30899.2 Da    PI: 7.9708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02891.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEde+lv+++ +   g+W++ +++ g+ R++k+c++rw +yl
  Rsa1.0_02891.1_g00004.1 14 KGPWTPEEDEILVEYIMKNSHGSWRLLPKKAGLLRCGKSCRLRWTNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding51.91.7e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T++E++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Rsa1.0_02891.1_g00004.1  67 RGPFTPQEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.281961IPR017930Myb domain
SuperFamilySSF466891.72E-2911108IPR009057Homeodomain-like
SMARTSM007178.2E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001671.05E-91661No hitNo description
PROSITE profilePS5129424.99562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2665116IPR009057Homeodomain-like
SMARTSM007178.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
CDDcd001678.10E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRKPCCDKN GLKKGPWTPE EDEILVEYIM KNSHGSWRLL PKKAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPQEEKLVVQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRMLSMG  120
LDPKTHEPLP SYALAMQAPS SQTTRHMAQW ESARLEAEAR LSRESLLFNP SGGEVVKYEC  180
DHFLRIWNSE IGESFRSIGV SSSTTISQSP CSRTTSSSNA LVVKECVIGT HHGSISSSSP  240
CSNNVEDVLS DTSLQFLLDF PISDDDMSFL EREHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02891.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104296.11e-172PREDICTED: protein ODORANT1-like
RefseqXP_009104297.11e-172PREDICTED: protein ODORANT1-like
SwissprotQ9M2D91e-152MYB17_ARATH; Transcription factor MYB17
TrEMBLM4CGW01e-171M4CGW0_BRARP; Uncharacterized protein
STRINGBra003443.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-139myb domain protein 17