PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02823.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 276aa    MW: 31544.2 Da    PI: 8.4111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02823.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-1275127155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++++h e Er+RR+++ s f  Lr +lP       ++K s ++ + +Av+YIk+L+
  Rsa1.0_02823.1_g00002.1  75 KKAKHRETERQRRQEVTSLFKYLRYILPVqY---VKGKRSSSDHVHEAVNYIKDLE 127
                              6899*************************66...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-772131No hitNo description
SuperFamilySSF474595.89E-1473149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.77974126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1075144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-975127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDFAPSSLFT VDFANENELD FSSLVSTSTF ISFQEPTPSN PIIHWARTEN EGRQRIRERT  60
MPDEITKEDV EPKNKKAKHR ETERQRRQEV TSLFKYLRYI LPVQYVKGKR SSSDHVHEAV  120
NYIKDLEKKI KEVSEKRDRI KRSITHPSPA GYCPIRSLAA SCSSLSSSSS ISSYCSCVGD  180
THIDVKVRTC LVGIEIVVSC CFRVDSRLSS VLQLLVQEQC FNVVTCISIR LHSRFLHTIV  240
CEVEKGIEIN FSELQEKIIK MGTSVYGLGL VFRVWV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02823.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463245.11e-156PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN951e-121BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A3P5YDB81e-138A0A3P5YDB8_BRACM; Uncharacterized protein
STRINGBo5g016800.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]