PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02800.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 1412aa    MW: 157905 Da    PI: 6.484
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02800.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.83.6e-35696190
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
                             lppGfrFhPt eel+++yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkat
  Rsa1.0_02800.1_g00003.1  6 LPPGFRFHPTGEELITYYLKRKINGREIEL-EIIPEIDLYKCEPWDLPgKsLLPNKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKAT 92
                             79****************************.99***************6345566899****************************** PP

                      NAM 87 gkdk 90
                             gk +
  Rsa1.0_02800.1_g00003.1 93 GKLR 96
                             *976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-484136IPR003441NAC domain
PROSITE profilePS5100535.0986161IPR003441NAC domain
PfamPF023652.5E-187112IPR003441NAC domain
SuperFamilySSF509784.12E-6415526IPR017986WD40-repeat-containing domain
PfamPF104336.5E-45417887No hitNo description
SuperFamilySSF509784.12E-6617635IPR017986WD40-repeat-containing domain
SuperFamilySSF509784.12E-6687703IPR017986WD40-repeat-containing domain
SuperFamilySSF509784.12E-6806957IPR017986WD40-repeat-containing domain
PfamPF031788.5E-710911178IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminal
PfamPF031785.5E-612771378IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1412 aa     Download sequence    Send to blast
MPPVSLPPGF RFHPTGEELI TYYLKRKING REIELEIIPE IDLYKCEPWD LPGKSLLPNK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKLRPEDG IGTGWVMHEY RLDETECEPT  120
AFGMQDAYAL CRVFKKIIIE AKPRLDQHQH QHYVNTRSNI SDPTRFGNTN AIGDRDDWSE  180
YMSQGMPTGF SSYVSPYGSY LTQPKRQMSL PPLRVENSRV QTSDFSNGMN QNSGECGFED  240
FTFAASNLNQ LYNNDVDDNI IHFGSLDEQF LNAGNTTWMR MSNENLKQSL IEEEEILPSF  300
EDNDQDLEFF WLLLSTAMDP MEFFRPNSYS KAAAGPRVQT AYGNYITTIR QPTAVTHSCC  360
GNFTSRKNLN LLICKGSVVS IYVMANSGSL EHLVDFPMFA RVVFMEISPV VGSAENFLFI  420
ASERGVLCTF GWDVVASNVV SRHTMKFQPT VLTHGLGNEA YDYIDYVKGG TISPDGQVVV  480
LLYCCKNILR IVDIDESGQG ETRFRKIFST SKKILDVKFL NSDNKRDVAL LYMVGVNFRS  540
GIYTIGAANL HVKSFYRHDN TTIEPTLLVP SLDSFLIIGR EGVIYANSNV AKTIFIGKID  600
VEAYGRVDEN PERCIYLLSG QDGHLFLLDV NIKKKMLPRL ALTSLGKTQT SQASSITLLS  660
NDIVFLGFRY AESQLVKMHK HTPGLEVLKM FANSGPVIDF SISNKPVGFR KLVMCSGTHE  720
DSSVEVVSTG VGINLKLAVD ILDVRRIWSL KYLHSDMHHT FLILQILGAK TRVLTVSGNG  780
GFINYNMAGF AYDKCTVCCH EAGDDHRGDN LFIQVTDESV RLISSKDGSL RTEWFPEPRS  840
QILFASATTK QVILSTSDQR LIYLRVGYNS LVEEKHLAGY DVSCLDISPL GDNASSSKLA  900
VVGLWRKRAV LLLSLPELEV LVTEHFESIP KCLLLCDFEG VSYLLCALVD GTLSTFKLVK  960
RQLQEKVTKK LKCFPATLRS FLSDGLPHVL LATEVAPVLI FIKDQQLQCT MLNVTDVPDV  1020
CPFHRPDLLE GLAIVKENGV VICSMGDVER NAKIPMTSYG RRICHQDQTE SNVVLVEEKK  1080
QPGAEFARHL VQLLDKALNT LSSFRLNEGE LGVSVISCSF AGQDERAYYC VGTSRPPEGR  1140
ILVFRVRGGE LRLVSQTITN GGVTYLKALH GGLLGMVGGL HCRYFEWRLN GDRYSLYENP  1200
NLAGIEAGGI EERVALISSS SQRYELRDIN SHTEPRFRTR FTAIHKLQND ATFCSDELYN  1260
IYSSAGFGEN GIPDKARQWY CGEFITQMKA GTLARMSDED CAQAPCVVFS TASGLIGGIV  1320
SLPPKIYKLL GKIQTSMRKC TMGKGCPDLK YPHISGGLSA LSTSTREEFI DGNLIECFPT  1380
LSLEDQMAVG RDTDLSVDEL EHIAGYVTYF RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a08_A3e-873441382231120DNA DAMAGE-BINDING PROTEIN 1
4a09_A3e-873441382231120DNA DAMAGE-BINDING PROTEIN 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02800.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475103.10.0PREDICTED: DNA damage-binding protein 1b-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-137NAC domain containing protein 86