PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02686.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 360aa    MW: 41364.8 Da    PI: 4.6942
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02686.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.2e-34141062102
                              HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
             HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                              Fl+k+ye+++d++ ++++sw+ ++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F
  Rsa1.0_02686.1_g00005.1  14 FLTKTYEMVDDSSSDTIVSWNpQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDF 90 
                              9********************9999***************************************99988.........******** PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +g+ +l+++i+r+k 
  Rsa1.0_02686.1_g00005.1  91 VRGQPHLMKNIHRRKP 106
                              *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-3310104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-5910104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-3611104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3014104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDESNHGGGS LPPFLTKTYE MVDDSSSDTI VSWNPQSNKS FIVWNPPEFS RDLLPRFFKH  60
NNFSSFIRQL NTYGFRKADP EQWEFANDDF VRGQPHLMKN IHRRKPVHSH SSQSLQAQQN  120
SSTDSERKRM ENQIERLVKE KEALVEELHK QEKERDVFEE QVKELEDKLQ HMEKRQKTMV  180
SFVSQVLEKP DLALNLSPCL PERKRRFPRT GLEGSTNPEH QVEQLESSIA VWESLVSDSS  240
ESMGQETVSM MILDVDESST CPESPPLSSI QLSIDTCPKS PPSPRTIDMN SEPDASKEHN  300
TVTPPPVEAV NDVFWEQLLT ENPGSTEQKE LQSDDKADEN CWWDSRNVNR ITEQLGHLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-22710413120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02686.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466429.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A3P6BR830.0A0A3P6BR83_BRACM; Uncharacterized protein
STRINGBo3g157380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-165heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]