PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02485.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 560aa MW: 62962 Da PI: 4.8807 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.5 | 5.6e-49 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +pGfrFhPtdeelv++yLk+k+ +++l++ ++i vd+yk++P++Lp + +k+++++w+fF++r++ky++ r+ r t++gyWka Rsa1.0_02485.1_g00005.1 13 APGFRFHPTDEELVMYYLKRKMCKRRLRV-NAIGVVDVYKLDPEELPrQsVLKTGDRQWFFFTPRSRKYPNAARSGRCTATGYWKA 97 69***************************.89**************96357788999***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+ ++ +++ vglkktLvfy+grap+ge+tdWvmhey++ Rsa1.0_02485.1_g00005.1 98 TGKDRVIVY-NSRSVGLKKTLVFYRGRAPSGERTDWVMHEYTM 139 ********9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.005 | 12 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-55 | 13 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-26 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MAESCLKGGK FSAPGFRFHP TDEELVMYYL KRKMCKRRLR VNAIGVVDVY KLDPEELPRQ 60 SVLKTGDRQW FFFTPRSRKY PNAARSGRCT ATGYWKATGK DRVIVYNSRS VGLKKTLVFY 120 RGRAPSGERT DWVMHEYTMD EEELGRCKNA KEYYALYKLF KKSGAGPKNG EDYGAPFQEE 180 EWVDDELGDD IAVQEEPVPR YLDNRLLFNP VSVQLDDIEE ILSGIPYAPE VPQTCINGLA 240 SDIPQVNSQE ELQSTLLNNS SGEFLEPREI GEFLPNVQPY NMPSSYESTE VTSAPNDSGT 300 GPFVFEKDDY IEMDDLLTSE LGASLTETPQ QFLDPGEFGE FNEFDQLFHD VSMFLEMEPI 360 LQEDSAGPSS LSNTSDKEHQ HFQVQTPENK LYSIMDPNPN PNQLTDDMKM MIRLFSLINR 420 SLLFLEHLRH LHQVLKTQYS SLSVNVMPGS TNLTTSVTAQ DGDGGTSPFS SALWAFMDSI 480 PSTPASACEG PINRTFVRMS SFSRMRLSGK ANGTPATTTV VAKKRSRNRG FLVLSIVGAL 540 CAIFWVFIAT VRASGRPVFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-45 | 14 | 139 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 38 | RKMCKRRL |
2 | 523 | 528 | KRSRNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02485.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592194.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A0D3CRV0 | 0.0 | A0A0D3CRV0_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g044390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |