PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02453.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 236aa MW: 26489.9 Da PI: 7.3474 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.4 | 9.1e-30 | 24 | 74 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQk Rsa1.0_02453.1_g00005.1 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQK 74 8*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 20 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.194 | 20 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-15 | 24 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.3E-21 | 24 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-7 | 25 | 74 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGKCGRSSDG GISGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQKRVLHHL QEEEEDRTME ISFMTTCLNT QGMIVFLGFT LLASENRREQ 120 TSGTDNDDDD FLNITNMART KTFAGNGKSI KFQPHHFLEA QSMKSNMGNE HEEEELSLSL 180 SLNHPPINEQ RWRSNASSSL SEASEALSSP FTSRDCFASS KIDLNLNLSF PSLLRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 25 | 74 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 25 | 74 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 25 | 74 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 25 | 74 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 25 | 74 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02453.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189499 | 1e-97 | AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482081.1 | 1e-110 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 5e-86 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A078I5B9 | 1e-105 | A0A078I5B9_BRANA; BnaA06g09420D protein | ||||
TrEMBL | A0A397YWD9 | 1e-105 | A0A397YWD9_BRACM; Uncharacterized protein | ||||
STRING | Bo5g019810.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 3e-78 | G2-like family protein |