PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02425.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 339aa    MW: 38478 Da    PI: 5.1998
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02425.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-152771898
                             --HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             +p ++ +e  ++   +kt  l+  + g  W+v +   k+++++++++GW++Fv++n+L +gD+++F +dg+++f  +v++f 
  Rsa1.0_02425.1_g00002.1  2 IPASYYDELPLV--LPKTALLQGsTGGCFWKVAM--FKRRDEVYFGQGWSKFVEDNRLSDGDVMTFVYDGSRSF--TVSIFG 77
                             777777777666..77889999845569******..999999**************************998888..999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.59E-12176No hitNo description
SMARTSM010191.7E-7179IPR003340B3 DNA binding domain
PROSITE profilePS5086314.762179IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17177IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-12276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-16277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-6238323IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-5239324IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.96244336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIPASYYDEL PLVLPKTALL QGSTGGCFWK VAMFKRRDEV YFGQGWSKFV EDNRLSDGDV  60
MTFVYDGSRS FTVSIFGGSR GCAEVRAVAQ VISVDDDDDD DDDNEDTNTS SERDMSQTVP  120
NARNQEDSSI VEPEVALRVP RTRNKGKKRV VVAKKRLVVQ DSDESFVSED SNSMSDDSSY  180
SPPNEDTLLD VTPKVTNSRK KGELRSVNSY VGSTSNISRS VSRTRQSTIK NPEVYLDDPE  240
NVCFETIVKN RIYELTVPNQ IVKDYCLKFQ DYVLFIDNHK NGKLEARAAT WQDQRVSIKK  300
WERIVQRNAL NKGDRLLCEL FRKEGLVYAI KIHFVNTTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02425.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469476.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A0D3A3J40.0A0A0D3A3J4_BRAOL; Uncharacterized protein
STRINGBo1g016660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.18e-41B3 family protein