PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02409.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 295aa    MW: 32581.4 Da    PI: 7.0004
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02409.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.8e-19209243135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Rsa1.0_02409.1_g00002.1 209 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 243
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.5E-991295IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.833203239IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-15203257IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14204265No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14207241IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.45E-14208256No hitNo description
PfamPF003206.8E-17209243IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MESVELSLKN INRKEKPVAT DDFSVDDLLD FSNDDVFVED ETKPKAGGVS VSLNDDEITL  60
NRTNELSSTA CEEDFGSELA VPTDDLAELE WLSNFVEDSY SAPTKKPVWL TGDRRHPVTP  120
VNEGLCFKAP LPVKNRTKRP RTGVSVWSLG SPSLTDSSSS SSSSSNPSTP LWLSGAEFLD  180
EEAVKRQKKA KKKKSVRENG GGQTQTRRCS HCGVQKTPQW RAGPLGAKTL CNACGVRFKS  240
GRLLPEYRPA CSPTFSSELH SNHHRKVIEM RQKKEMSTDV DESGMNRTVQ AVQSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02409.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456971.10.0PREDICTED: GATA transcription factor 6
SwissprotQ9SD381e-104GATA6_ARATH; GATA transcription factor 6
TrEMBLM4FCR31e-171M4FCR3_BRARP; GATA transcription factor
STRINGBra038882.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.13e-85GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]