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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_02406.1_g00010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
Trihelix |
| Protein Properties |
Length: 318aa MW: 35000.2 Da PI: 6.5866 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_02406.1_g00010.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 54.8 | 2.5e-17 | 71 | 159 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
+W+++ +++Liea e+ ++ ++g lk+++W+ev++++ r+ ++ ++ +qCk++++ ++k+yk +k+ ++ + s++++f+
Rsa1.0_02406.1_g00010.1 71 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKLEKAKIASG-HDGPSNWVFFK 155
7*************************************988888999**************************9.56667****** PP
trihelix 84 qlea 87
+lea
Rsa1.0_02406.1_g00010.1 156 KLEA 159
*985 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0048831 | Biological Process | regulation of shoot system development |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MEEEDSPKSP GDSSSPAPPS PPPILPTNND VTATKPPQSP SRNALAVPTP SVGGGSRNGR 60
SGGGGGGRDD CWSEEATKVL IEAWGERFSE PGKGTLKQQQ WKEVAEVVNE SRQCKYLKTD 120
VQCKNRIDTV KKKYKLEKAK IASGHDGPSN WVFFKKLEAL IGGGNAKAPA PMGRRQGKGT 180
GLKRSSGGDS MRWHFRKRSA SETESESDPE PDDSAESLPP LVVSKRLKMD EESGVGDVAK 240
AILGFTEAYE KAETAKLKLM MELEKERMKF VKEMELQRMQ FLKTQMEMTQ NDQEEERSKP 300
RRINDDDDDV KNNGDVSS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
