PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02405.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18066.5 Da PI: 6.3526 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.4 | 1e-14 | 2 | 40 | 11 | 49 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 vtf+kR+ngi K +ELSvLC+a+v +i+s +gk +++ Rsa1.0_02405.1_g00006.1 2 VTFCKRKNGIYTKLSELSVLCGADVGFLIYSGSGKPFTF 40 9**********************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 9.4E-17 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.142 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-8 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-17 | 2 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-8 | 6 | 21 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-8 | 21 | 42 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MVTFCKRKNG IYTKLSELSV LCGADVGFLI YSGSGKPFTF GSPSFDVVAQ RFLHGNHHPG 60 VTSGEGNSSL SSMIVDAHKK MKVDELCKNL NNLMEIKTDA EEEKLKMGEA AYASSLPVKS 120 TDEEEAKQLL RRYEEFYEEL CEVAAAKIRG RYDASTSASF LPHG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02405.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474462.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_018474473.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A078GM39 | 1e-85 | A0A078GM39_BRANA; BnaA09g26550D protein | ||||
STRING | Bo5g061120.1 | 9e-84 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 3e-35 | AGAMOUS-like 64 |